Sub-family  

Parent family
HOM000031
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO002953 has 30 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G47030 aly name=fgenesh2_kg.1__4288__AT1G52190.1;pid=474334;prot=eq;tid=474334 + scaffold_1 No
AL3G17190 aly name=scaffold_301890.1;pid=897920;prot=eq;tid=929433 - scaffold_3 No
AT1G52190 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G16180.1); Has 5212 Blast hits to 5001 proteins in 870 species: Archae - 0; Bacteria - 1843; Metazoa - 575; Fungi - 389; Plants - 2143; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 1 No
AT3G16180 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G52190.1); Has 5584 Blast hits to 5329 proteins in 963 species: Archae - 0; Bacteria - 2098; Metazoa - 610; Fungi - 414; Plants - 2170; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; - 3 No
BD2G50570 bdi proton-dependent oligopeptide secondary active transmembrane transporter activity (Blast2GO) pid=Bradi2g50570.1;tid=Bradi2g50570.1;GeneName=Bradi2g50570;transcript=eq;prot=eq - Bd2 No
CP00324G00010 cpa name=evm.TU.supercontig_324.1;pid=evm.TU.supercontig_324.1;prot=eq;transcript=eq - supercontig_324 No
GM07G02140 gma 07 pid=16265872;transcript=eq;prot=eq;name=Glyma07g02140.1 + Gm07 No
GM07G02150 gma 07 pid=16265873;transcript=eq;prot=eq;name=Glyma07g02150.1 + Gm07 No
GM08G21800 gma 08 pid=16272016;transcript=eq;prot=eq;name=Glyma08g21800.1 + Gm08 No
GM08G21810 gma 08 pid=16272017;transcript=eq;prot=eq;name=Glyma08g21810.1 + Gm08 No
GM15G02000 gma 15 pid=16297323;transcript=eq;prot=eq;name=Glyma15g02000.1 - Gm15 No
GM15G02010 gma 15 pid=16297324;transcript=eq;prot=eq;name=Glyma15g02010.1 - Gm15 No
LJ3G001170 lja prot=eq;transcript=eq;scaffold=LjT07H20;name=chr3.LjT07H20.20.nd - chr3 No
ME07351G00510 mes PACid=17984166;RNAname=cassava4.1_003830m;GeneName=cassava4.1_003830m.g;transcript=eq;prot=eq + scaffold07351 No
ME07708G00140 mes PACid=17962314;RNAname=cassava4.1_033185m;GeneName=cassava4.1_033185m.g;transcript=eq;prot=eq + scaffold07708 No
ME10797G00250 mes PACid=17983714;RNAname=cassava4.1_029990m;GeneName=cassava4.1_029990m.g;transcript=eq;prot=eq + scaffold10797 No
MT2G101560 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region transcript=eq;prot=eq;pid=Medtr2g101560.1; + 2 No
MT2G101590 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region transcript=eq;prot=eq;pid=Medtr2g101590.1; + 2 No
MT2G101610 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region transcript=eq;prot=eq;pid=Medtr2g101610.1; + 2 No
MT2G101640 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region transcript=eq;prot=eq;pid=Medtr2g101640.1; + 2 No
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