Sub-family  

Parent family
HOM000047
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO002932 has 30 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28290 aly name=fgenesh2_kg.1__2866__AT1G24330.1;pid=472912;prot=eq;tid=472912 - scaffold_1 No
AL1G29040 aly name=scaffold_103118.1;pid=890324;prot=eq;tid=921837 - scaffold_1 No
AL2G15500 aly name=fgenesh1_pm.C_scaffold_2000802;pid=315769;prot=eq;tid=315769 + scaffold_2 No
AT1G24330 ath ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 1 No
AT1G27910 ath Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.;plant U-box 45 transcript=eq;prot=eq; - 1 No
AT1G67530 ath ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 3478 Blast hits to 3233 proteins in 245 species: Archae - 0; Bacteria - 16; Metazoa - 777; Fungi - 226; Plants - 2201; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 1 No
BD2G57817 bdi pid=Bradi2g57817.1;tid=Bradi2g57817.1;GeneName=Bradi2g57817;transcript=eq;prot=eq - Bd2 No
CP00043G00210 cpa name=evm.TU.supercontig_43.21;pid=evm.TU.supercontig_43.21;prot=eq;transcript=eq + supercontig_43 No
FV0G12560 fve U-box domain-containing protein 45 (putative) transcript=eq;prot=eq;pid=gene07151 - scf0513160 No
GM05G27880 gma 05 pid=16259865;transcript=eq;prot=eq;name=Glyma05g27880.1 - Gm05 No
GM08G10860 gma 08 pid=16270700;transcript=eq;prot=eq;name=Glyma08g10860.1 - Gm08 No
GM11G37220 gma 11 pid=16285678;transcript=eq;prot=eq;name=Glyma11g37220.1 + Gm11 No
GM18G01180 gma 18 pid=16307544;transcript=eq;prot=eq;name=Glyma18g01180.1 + Gm18 No
MD13G008910 mdo transcript=eq;prot=eq;pid=MDP0000460903;tid=MDP0000460903;contig=MDC004881.433 - 13 No
MD16G007090 mdo transcript=eq;prot=eq;pid=MDP0000881928;tid=MDP0000881928;contig=MDC005923.474 - 16 No
ME04175G01090 mes PACid=17963329;RNAname=cassava4.1_002028m;GeneName=cassava4.1_002028m.g;transcript=eq;prot=eq - scaffold04175 No
ME07543G00450 mes PACid=17978232;RNAname=cassava4.1_002078m;GeneName=cassava4.1_002078m.g;transcript=eq;prot=eq - scaffold07543 No
MT3G085610 mtr U-box domain-containing protein (AHRD V1 *-*- Q1EPA8_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical transcript=eq;prot=eq;pid=Medtr3g085610.1; + 3 No
OS01G67500 osa armadillo%2Fbeta%2Dcatenin repeat family protein, putative, expressed transcript=eq;prot=eq; - 1 No
OSINDICA_01G64090 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC004335; - Chr01 No
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