Sub-family  

Parent family
HOM000130
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO002786 has 31 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G12710 aly name=fgenesh2_kg.6__1251__AT5G13010.1;pid=488117;prot=eq;tid=488117 + scaffold_6 No
AT5G13010 ath embryo defective 3011 (EMB3011); FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RNA helicase family protein transcript=eq;prot=eq; + 5 No
BD1G26607 bdi pid=Bradi1g26607.1;tid=Bradi1g26607.1;GeneName=Bradi1g26607;transcript=eq;prot=eq + Bd1 No
BD3G03570 bdi ATP-dependent RNA helicase activity (Blast2GO) pid=Bradi3g03570.1;tid=Bradi3g03570.1;GeneName=Bradi3g03570;transcript=eq;prot=eq + Bd3 No
BD3G22680 bdi ATP-dependent RNA helicase activity (Blast2GO) pid=Bradi3g22680.1;tid=Bradi3g22680.1;GeneName=Bradi3g22680;transcript=eq;prot=eq + Bd3 No
CP00701G00010 cpa name=evm.TU.supercontig_701.1;pid=evm.TU.supercontig_701.1;prot=eq;transcript=eq + supercontig_701 No
CR05G00110 cre name=estExt_fgenesh1_pg.C_chromosome_50008;pid=343909;prot=eq;tid=343916;transcript=eq + chromosome_5 No
FV0G12580 fve Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (probable) transcript=eq;prot=eq;pid=gene07153 + scf0513160 No
FV3G11930 fve Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (similar to) transcript=eq;prot=eq;pid=gene19914 + LG3 No
FV3G36500 fve Probable pre-mRNA-splicing factor ATP-dependent RNA helicase (putative) transcript=eq;prot=eq;pid=gene24752 + LG3 No
GM13G41740 gma 13 pid=16293443;transcript=eq;prot=eq;name=Glyma13g41740.1 + Gm13 No
GM15G03660 gma 15 pid=16297519;transcript=eq;prot=eq;name=Glyma15g03660.1 - Gm15 No
MD05G009650 mdo transcript=eq;prot=eq;pid=MDP0000297705;tid=MDP0000297705;contig=MDC011691.463 + 5 No
ME03874G00090 mes PACid=17960905;RNAname=cassava4.1_000824m;GeneName=cassava4.1_000824m.g;transcript=ne;prot=eq + scaffold03874 No
MRCC299_08G05630 mrcc299 name=EuGene.0800010568;pid=61000;prot=eq;tid=61000;transcript=eq - Chr_08 No
MT2G098440 mtr Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (AHRD V1 **** Q92620); contains Interpro domain(s) IPR007502 Helicase-associated region transcript=eq;prot=eq;pid=Medtr2g098440.1; + 2 No
OL08G03240 olu NULL name=e_gwEuk.8.10.1,pid=42421,prot=eq,tid=42421 + Chr_8 No
OS06G23530 osa pre%2DmRNA%2Dsplicing factor ATP%2Ddependent RNA helicase, putative, expressed transcript=eq;prot=eq; - 6 No
OS07G32430 osa pre%2DmRNA%2Dsplicing factor ATP%2Ddependent RNA helicase PRP16, putative, expressed transcript=eq;prot=eq; - 7 No
OSINDICA_06G21310 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC010542; - Chr06 No
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