Sub-family  

Parent family
HOM001222
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family ORTHO002760 has 31 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G08880 aly name=fgenesh2_kg.5__689__AT3G29270.2;pid=484697;prot=eq;tid=484697 + scaffold_5 No
AT3G29270 ath RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1); Has 253 Blast hits to 253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
BD1G16170 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g16170.3;tid=Bradi1g16170.3;GeneName=Bradi1g16170;transcript=eq;prot=eq + Bd1 No
BD1G70360 bdi RING, subfamily RING zinc finger protein-like, putative pid=Bradi1g70360.1;tid=Bradi1g70360.1;GeneName=Bradi1g70360;transcript=eq;prot=eq - Bd1 No
CP00014G01430 cpa name=evm.TU.supercontig_14.143;pid=evm.TU.supercontig_14.143;prot=eq;transcript=eq + supercontig_14 No
FV6G43290 fve RING finger protein 208 (probable) transcript=eq;prot=eq;pid=gene04347 - LG6 No
GM13G05870 gma 13 pid=16289784;transcript=eq;prot=eq;name=Glyma13g05870.1 + Gm13 No
GM19G03380 gma 19 pid=16311766;transcript=eq;prot=eq;name=Glyma19g03380.1 + Gm19 No
LJ2G012050 lja prot=eq;transcript=eq;scaffold=LjT16J19;name=chr2.LjT16J19.100.nc - chr2 No
MD00G117490 mdo transcript=eq;prot=eq;pid=MDP0000393748;tid=MDP0000393748;contig=MDC005011.136 + MDC005011.136 No
MD09G004370 mdo transcript=eq;prot=eq;pid=MDP0000564253;tid=MDP0000564253;contig=MDC001371.254 + 9 No
ME06609G00500 mes PACid=17983592;RNAname=cassava4.1_014099m;GeneName=cassava4.1_014099m.g;transcript=eq;prot=eq - scaffold06609 No
ME11341G01170 mes PACid=17978815;RNAname=cassava4.1_014103m;GeneName=cassava4.1_014103m.g;transcript=eq;prot=eq + scaffold11341 No
MT6G013720 mtr RING finger protein 208 (AHRD V1 *-*- Q8K0W3); contains Interpro domain(s) IPR001841 Zinc finger, RING-type IPR017907 Zinc finger, RING-type, conserved site transcript=eq;prot=eq;pid=Medtr6g013720.1; + 6 No
OS03G11260 osa RING zinc finger protein%2Dlike, putative, expressed transcript=eq;prot=eq; + 3 No
OS03G31320 osa RING zinc finger protein%2Dlike, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G09770 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC037599; + Chr03 No
OSINDICA_03G29660 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC037946; - Chr03 No
PP00078G00980 ppa NULL name=gw1.78.69.1,pid=17579,prot=eq,tid=17579 - scaffold_78 No
PP00104G00700 ppa NULL name=gw1.104.126.1,pid=47096,prot=eq,tid=47096 + scaffold_104 No
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