Sub-family 
- Id
- ORTHO002643
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM001692
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (3 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (2 genes)
The gene family ORTHO002643 has 31 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO002643
Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G38920 | aly | name=scaffold_104145.1;pid=891351;prot=eq;tid=922864 | - | scaffold_1 | No | |
| AT1G43710 | ath | embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink).;Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | transcript=eq;prot=eq; | - | 1 | No |
| BD2G41817 | bdi | pid=Bradi2g41817.1;tid=Bradi2g41817.1;GeneName=Bradi2g41817;transcript=eq;prot=eq | - | Bd2 | No | |
| BD3G45260 | bdi | glutamate decarboxylase activity (Blast2GO) | pid=Bradi3g45260.1;tid=Bradi3g45260.1;GeneName=Bradi3g45260;transcript=eq;prot=eq | + | Bd3 | No |
| BD5G09817 | bdi | pid=Bradi5g09817.1;tid=Bradi5g09817.1;GeneName=Bradi5g09817;transcript=eq;prot=eq | + | Bd5 | No | |
| CP00021G01800 | cpa | name=evm.TU.supercontig_21.180;pid=evm.TU.supercontig_21.180;prot=eq;transcript=eq | + | supercontig_21 | No | |
| CR01G07900 | cre | name=gwH.1.129.1;pid=40158;prot=eq;tid=40158;transcript=eq | + | chromosome_1 | No | |
| FV2G22450 | fve | Histidine decarboxylase (HDC) (similar to) | transcript=eq;prot=eq;pid=gene32644 | - | LG2 | No |
| GM08G08130 | gma | 08 | pid=16270373;transcript=eq;prot=eq;name=Glyma08g08130.1 | + | Gm08 | No |
| GM08G19360 | gma | 08 | pid=16271717;transcript=eq;prot=eq;name=Glyma08g19360.1 | + | Gm08 | No |
| GM15G05630 | gma | 15 | pid=16297753;transcript=eq;prot=eq;name=Glyma15g05630.1 | - | Gm15 | No |
| LJ6G019460 | lja | prot=eq;transcript=eq;scaffold=CM0314;name=chr6.CM0314.630.nc | + | chr6 | No | |
| MD10G001530 | mdo | transcript=eq;prot=eq;pid=MDP0000124089;tid=MDP0000124089;contig=MDC008219.437 | + | 10 | No | |
| MD15G032610 | mdo | transcript=eq;prot=eq;pid=MDP0000204933;tid=MDP0000204933;contig=MDC012390.360 | - | 15 | No | |
| ME05230G00120 | mes | PACid=17981724;RNAname=cassava4.1_006529m;GeneName=cassava4.1_006529m.g;transcript=eq;prot=eq | - | scaffold05230 | No | |
| ME06688G00450 | mes | PACid=17968655;RNAname=cassava4.1_006753m;GeneName=cassava4.1_006753m.g;transcript=eq;prot=eq | + | scaffold06688 | No | |
| MT2G008120 | mtr | Histidine decarboxylase (AHRD V1 ***- P54772); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase | transcript=eq;prot=eq;pid=Medtr2g008120.1; | - | 2 | No |
| OS02G33710 | osa | decarboxylase, putative, expressed | transcript=eq;prot=eq; | + | 2 | No |
| OSINDICA_02G32460 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC014226; | + | Chr02 | No |
| PP00013G00840 | ppa | NULL | name=estExt_Genewise1.C_130113,pid=203066,prot=eq,tid=203066 | + | scaffold_13 | No |