Sub-family 
- Id
- ORTHO002640
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (1 gene)
- lja
- Lotus japonicus (1 gene)
- mes
- Manihot esculenta (3 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ppa
- Physcomitrella patens (6 genes)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (2 genes)
- tca
- Theobroma cacao (2 genes)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO002640 has 31 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO002640
Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G36660 | aly | name=fgenesh1_pm.C_scaffold_1002774;pid=313994;prot=eq;tid=313994 | + | scaffold_1 | No | |
| AL4G21040 | aly | name=fgenesh1_pg.C_scaffold_4001641;pid=345299;prot=eq;tid=345299 | + | scaffold_4 | No | |
| AT1G31310 | ath | hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G35640.1); Has 3054 Blast hits to 2678 proteins in 309 species: Archae - 8; Bacteria - 384; Metazoa - 1064; Fungi - 253; Plants - 884; Viruses - 120; Other Eukaryotes - 341 (source: NCBI BLink).;hydroxyproline-rich glycoprotein family protein | transcript=eq;prot=eq; | - | 1 | No |
| AT2G35640 | ath | Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).;Homeodomain-like superfamily protein | transcript=eq;prot=eq; | + | 2 | No |
| BD5G25700 | bdi | THX transcription factor | pid=Bradi5g25700.1;tid=Bradi5g25700.1;GeneName=Bradi5g25700;Name=BdTHX24;transcript=eq;prot=eq | + | Bd5 | No |
| CP00002G00870 | cpa | name=evm.TU.supercontig_2.87;pid=evm.TU.supercontig_2.87;prot=eq;transcript=eq | + | supercontig_2 | No | |
| CP00192G00020 | cpa | name=evm.TU.supercontig_192.2;pid=evm.TU.supercontig_192.2;prot=eq;transcript=eq | - | supercontig_192 | No | |
| FV3G10300 | fve | Transketolase 2 (TK 2) (probable) | transcript=eq;prot=eq;pid=gene20074 | + | LG3 | No |
| GM20G32540 | gma | 20 | pid=16317627;transcript=eq;prot=eq;name=Glyma20g32540.1 | - | Gm20 | No |
| LJ5G022590 | lja | prot=eq;transcript=eq;scaffold=CM0311;name=chr5.CM0311.70.nc | + | chr5 | No | |
| ME08799G00640 | mes | PACid=17984676;RNAname=cassava4.1_022367m;GeneName=cassava4.1_022367m.g;transcript=ne;prot=eq | - | scaffold08799 | No | |
| ME09140G00050 | mes | PACid=17968317;RNAname=cassava4.1_031132m;GeneName=cassava4.1_031132m.g;transcript=eq;prot=eq | - | scaffold09140 | No | |
| ME10173G00180 | mes | PACid=17961390;RNAname=cassava4.1_029958m;GeneName=cassava4.1_029958m.g;transcript=ne;prot=eq | - | scaffold10173 | No | |
| OS04G57530 | osa | transcription factor, putative, expressed | transcript=eq;prot=eq; | - | 4 | No |
| OSINDICA_04G49680 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC019184; | - | Chr04 | No |
| PP00020G01610 | ppa | NULL | name=gw1.20.132.1,pid=26475,prot=eq,tid=26475 | - | scaffold_20 | No |
| PP00026G00330 | ppa | NULL | name=estExt_fgenesh1_pg.C_260034,pid=160775,prot=eq,tid=160775 | - | scaffold_26 | No |
| PP00071G00500 | ppa | NULL | name=estExt_fgenesh2_pg.C_710050,pid=233091,prot=eq,tid=233091 | - | scaffold_71 | No |
| PP00085G00400 | ppa | NULL | name=gw1.85.77.1,pid=17771,prot=eq,tid=17771 | + | scaffold_85 | No |
| PP00271G00200 | ppa | NULL | name=estExt_fgenesh1_kg.C_2710002,pid=110468,prot=eq,tid=110468 | + | scaffold_271 | No |