Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (3 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO002640 has 31 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G36660 aly name=fgenesh1_pm.C_scaffold_1002774;pid=313994;prot=eq;tid=313994 + scaffold_1 No
AL4G21040 aly name=fgenesh1_pg.C_scaffold_4001641;pid=345299;prot=eq;tid=345299 + scaffold_4 No
AT1G31310 ath hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G35640.1); Has 3054 Blast hits to 2678 proteins in 309 species: Archae - 8; Bacteria - 384; Metazoa - 1064; Fungi - 253; Plants - 884; Viruses - 120; Other Eukaryotes - 341 (source: NCBI BLink).;hydroxyproline-rich glycoprotein family protein transcript=eq;prot=eq; - 1 No
AT2G35640 ath Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).;Homeodomain-like superfamily protein transcript=eq;prot=eq; + 2 No
BD5G25700 bdi THX transcription factor pid=Bradi5g25700.1;tid=Bradi5g25700.1;GeneName=Bradi5g25700;Name=BdTHX24;transcript=eq;prot=eq + Bd5 No
CP00002G00870 cpa name=evm.TU.supercontig_2.87;pid=evm.TU.supercontig_2.87;prot=eq;transcript=eq + supercontig_2 No
CP00192G00020 cpa name=evm.TU.supercontig_192.2;pid=evm.TU.supercontig_192.2;prot=eq;transcript=eq - supercontig_192 No
FV3G10300 fve Transketolase 2 (TK 2) (probable) transcript=eq;prot=eq;pid=gene20074 + LG3 No
GM20G32540 gma 20 pid=16317627;transcript=eq;prot=eq;name=Glyma20g32540.1 - Gm20 No
LJ5G022590 lja prot=eq;transcript=eq;scaffold=CM0311;name=chr5.CM0311.70.nc + chr5 No
ME08799G00640 mes PACid=17984676;RNAname=cassava4.1_022367m;GeneName=cassava4.1_022367m.g;transcript=ne;prot=eq - scaffold08799 No
ME09140G00050 mes PACid=17968317;RNAname=cassava4.1_031132m;GeneName=cassava4.1_031132m.g;transcript=eq;prot=eq - scaffold09140 No
ME10173G00180 mes PACid=17961390;RNAname=cassava4.1_029958m;GeneName=cassava4.1_029958m.g;transcript=ne;prot=eq - scaffold10173 No
OS04G57530 osa transcription factor, putative, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_04G49680 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC019184; - Chr04 No
PP00020G01610 ppa NULL name=gw1.20.132.1,pid=26475,prot=eq,tid=26475 - scaffold_20 No
PP00026G00330 ppa NULL name=estExt_fgenesh1_pg.C_260034,pid=160775,prot=eq,tid=160775 - scaffold_26 No
PP00071G00500 ppa NULL name=estExt_fgenesh2_pg.C_710050,pid=233091,prot=eq,tid=233091 - scaffold_71 No
PP00085G00400 ppa NULL name=gw1.85.77.1,pid=17771,prot=eq,tid=17771 + scaffold_85 No
PP00271G00200 ppa NULL name=estExt_fgenesh1_kg.C_2710002,pid=110468,prot=eq,tid=110468 + scaffold_271 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier