Sub-family  

Parent family
HOM000325
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family ORTHO002611 has 31 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09930 aly name=fgenesh2_kg.1__1078__AT1G10090.1;pid=471124;prot=eq;tid=471124 - scaffold_1 No
AL2G07040 aly name=scaffold_200716.1;pid=893642;prot=eq;tid=925155 - scaffold_2 No
AT1G10090 ath Early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: lipases;hydrolases, acting on ester bonds (TAIR:AT1G58520.1); Has 1417 Blast hits to 1261 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 691; Plants - 423; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).;Early-responsive to dehydration stress protein (ERD4) transcript=eq;prot=eq; - 1 No
AT1G58520 ath RXW8; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G10090.1); Has 4395 Blast hits to 4270 proteins in 234 species: Archae - 0; Bacteria - 14; Metazoa - 185; Fungi - 607; Plants - 3474; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).;lipases;hydrolases, acting on ester bonds transcript=eq;prot=eq; + 1 No
BD1G10130 bdi pid=Bradi1g10130.1;tid=Bradi1g10130.1;GeneName=Bradi1g10130;transcript=eq;prot=eq + Bd1 No
BD1G12670 bdi pid=Bradi1g12670.1;tid=Bradi1g12670.1;GeneName=Bradi1g12670;transcript=eq;prot=eq + Bd1 No
BD4G00860 bdi pid=Bradi4g00860.1;tid=Bradi4g00860.1;GeneName=Bradi4g00860;transcript=eq;prot=eq + Bd4 No
CP00160G00240 cpa name=evm.TU.supercontig_160.24;pid=evm.TU.supercontig_160.24;prot=eq;transcript=eq - supercontig_160 No
FV2G32240 fve hypothetical protein transcript=eq;prot=eq;pid=gene02642 + LG2 No
GM00G00155 gma 41 pid=16242699;transcript=eq;prot=eq;name=Glyma0041s00290.1 + scaffold_41 No
GM00G00160 gma 41 pid=16242700;transcript=eq;prot=eq;name=Glyma0041s00290.2 + scaffold_41 No
GM04G05160 gma 04 pid=16254915;transcript=eq;prot=eq;name=Glyma04g05160.1 + Gm04 No
GM14G10320 gma 14 pid=16295047;transcript=eq;prot=eq;name=Glyma14g10320.1 + Gm14 No
MD15G001370 mdo transcript=eq;prot=eq;pid=MDP0000262512;tid=MDP0000262512;contig=MDC022724.206 - 15 No
ME03299G00170 mes PACid=17968536;RNAname=cassava4.1_002403m;GeneName=cassava4.1_002403m.g;transcript=eq;prot=eq + scaffold03299 No
ME09127G00050 mes PACid=17962871;RNAname=cassava4.1_021556m;GeneName=cassava4.1_021556m.g;transcript=eq;prot=eq + scaffold09127 No
OS03G51620 osa DUF221 domain containing protein, expressed transcript=eq;prot=eq; - 3 No
OS12G43720 osa early%2Dresponsive to dehydration protein%2Drelated, putative, expressed transcript=eq;prot=eq; - 12 No
OSINDICA_01G17390 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC001227; - Chr01 No
OSINDICA_03G45310 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC007873; - Chr03 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier