Sub-family  

Parent family
HOM002787
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO002442 has 32 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12850 aly name=scaffold_301421.1;pid=897451;prot=eq;tid=928964 - scaffold_3 No
AL6G13580 aly name=fgenesh2_kg.6__1344__AT5G13860.1;pid=488210;prot=eq;tid=488210 - scaffold_6 No
AT3G12400 ath Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.;Ubiquitin-conjugating enzyme/RWD-like protein transcript=eq;prot=eq; - 3 No
AT5G13860 ath ELCH-like (ELC-Like); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, protein modification process, protein transport, post-translational protein modification; LOCATED IN: ESCRT I complex; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme/RWD-like protein (TAIR:AT3G12400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;ELCH-like transcript=eq;prot=eq; - 5 No
BD1G04460 bdi pid=Bradi1g04460.1;tid=Bradi1g04460.1;GeneName=Bradi1g04460;transcript=eq;prot=eq - Bd1 No
BD3G60837 bdi pid=Bradi3g60837.1;tid=Bradi3g60837.1;GeneName=Bradi3g60837;transcript=eq;prot=eq + Bd3 No
CP00033G01420 cpa name=evm.TU.supercontig_33.142;pid=evm.TU.supercontig_33.142;prot=eq;transcript=eq - supercontig_33 No
CP00073G00060 cpa name=evm.TU.supercontig_73.6;pid=evm.TU.supercontig_73.6;prot=eq;transcript=eq + supercontig_73 No
CR07G08050 cre name=SAN_Chlre2_kg.scaffold_16000223;pid=195569;prot=eq;tid=195569;transcript=eq + chromosome_7 No
FV4G08940 fve Protein ELC (AtELC) (putative) transcript=eq;prot=eq;pid=gene22451 + LG4 No
GM11G10530 gma 11 pid=16283379;transcript=eq;prot=eq;name=Glyma11g10530.1 + Gm11 No
GM12G02840 gma 12 pid=16286167;transcript=eq;prot=eq;name=Glyma12g02840.1 + Gm12 No
LJ0G212670 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_068642;name=LjSGA_068642.1 - LjSGA_068642 No
MD00G047540 mdo transcript=eq;prot=eq;pid=MDP0000236145;tid=MDP0000236145;contig=MDC001986.227 - MDC001986.227 No
MD07G003550 mdo transcript=eq;prot=eq;pid=MDP0000272640;tid=MDP0000272640;contig=MDC003983.197 - 7 No
ME05875G01860 mes PACid=17973182;RNAname=cassava4.1_008327m;GeneName=cassava4.1_008327m.g;transcript=ne;prot=eq + scaffold05875 No
ME10504G00020 mes PACid=17970172;RNAname=cassava4.1_008476m;GeneName=cassava4.1_008476m.g;transcript=ne;prot=eq - scaffold10504 No
MRCC299_03G02530 mrcc299 name=e_gw2.03.354.1;pid=80230;prot=eq;tid=80230;transcript=eq + Chr_03 No
MT4G075250 mtr Protein ELC (AHRD V1 ***- Q9LHG8); contains Interpro domain(s) IPR016135 Ubiquitin-conjugating enzyme/RWD-like transcript=eq;prot=eq;pid=Medtr4g075250.1; - 4 No
OL03G00240 olu NULL name=ost_03_002_013,pid=86599,prot=eq,tid=86599 + Chr_3 No
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