Sub-family 
- Id
- ORTHO002402
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM002721
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (2 genes)
- mes
- Manihot esculenta (2 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO002402 has 32 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO002402
Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G51420 | aly | name=fgenesh1_pg.C_scaffold_1004299;pid=337734;prot=eq;tid=337734 | + | scaffold_1 | No | |
| AL7G32880 | aly | name=fgenesh1_pg.C_scaffold_7002750;pid=355577;prot=eq;tid=355577 | - | scaffold_7 | No | |
| AT1G54440 | ath | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT5G35910.1).;Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | transcript=eq;prot=eq; | + | 1 | No |
| AT5G35910 | ath | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT1G54440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | transcript=eq;prot=eq; | - | 5 | No |
| BD3G27252 | bdi | pid=Bradi3g27252.1;tid=Bradi3g27252.1;GeneName=Bradi3g27252;transcript=eq;prot=eq | - | Bd3 | No | |
| CP00161G00170 | cpa | name=evm.TU.supercontig_161.17;pid=evm.TU.supercontig_161.17;prot=eq;transcript=eq | + | supercontig_161 | No | |
| CR12G05910 | cre | name=au.g3315_t1;pid=284930;prot=eq;tid=284937;transcript=eq | + | chromosome_12 | No | |
| FV0G49860 | fve | Exosome component 10 (PM/Scl-100) (probable) | transcript=eq;prot=eq;pid=gene24458 | + | scf0513033 | No |
| GM05G11200 | gma | 05 | pid=16258856;transcript=eq;prot=eq;name=Glyma05g11200.1 | + | Gm05 | No |
| GM05G13920 | gma | 05 | pid=16258915;transcript=eq;prot=eq;name=Glyma05g13920.1 | - | Gm05 | No |
| GM17G24130 | gma | 17 | pid=16306377;transcript=eq;prot=eq;name=Glyma17g24130.1 | - | Gm17 | No |
| GM19G29260 | gma | 19 | pid=16313167;transcript=eq;prot=eq;name=Glyma19g29260.1 | + | Gm19 | No |
| LJ0G011680 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_008613;name=LjSGA_008613.1 | - | LjSGA_008613 | No | |
| LJ1G042000 | lja | prot=eq;transcript=eq;scaffold=LjT38H23;name=chr1.LjT38H23.70.nd | - | chr1 | No | |
| ME02431G00250 | mes | PACid=17975233;RNAname=cassava4.1_026828m;GeneName=cassava4.1_026828m.g;transcript=eq;prot=eq | - | scaffold02431 | No | |
| ME02431G00260 | mes | PACid=17975199;RNAname=cassava4.1_007783m;GeneName=cassava4.1_007783m.g;transcript=eq;prot=eq | - | scaffold02431 | No | |
| MRCC299_04G01370 | mrcc299 | name=gw2.04.171.1;pid=67391;prot=eq;tid=67391;transcript=eq | + | Chr_04 | No | |
| MT7G086370 | mtr | Exosome complex exonuclease rrp6 (AHRD V1 *-*- Q10146); contains Interpro domain(s) IPR002562 3'-5' exonuclease | transcript=eq;prot=eq;pid=Medtr7g086370.1; | + | 7 | No |
| OL12G03160 | olu | NULL | name=e_gwEuk.12.319.1,pid=39090,prot=eq,tid=39090 | + | Chr_12 | No |
| OS10G30100 | osa | 3%2D5 exonuclease family protein, putative, expressed | transcript=eq;prot=eq; | - | 10 | No |