Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO002388 has 32 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G42740 aly name=fgenesh2_kg.1__3991__AT1G48920.1;pid=474037;prot=eq;tid=474037 + scaffold_1 No
AT1G48920 ath Encodes ATNUC-L1 (NUCLEOLIN LIKE 1), the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants.;nucleolin like 1 transcript=eq;prot=eq; + 1 No
BD3G14907 bdi pid=Bradi3g14907.1;tid=Bradi3g14907.1;GeneName=Bradi3g14907;transcript=eq;prot=eq + Bd3 No
BD5G22117 bdi pid=Bradi5g22117.1;tid=Bradi5g22117.1;GeneName=Bradi5g22117;transcript=eq;prot=eq + Bd5 No
CP00183G00050 cpa name=evm.TU.supercontig_183.5;pid=evm.TU.supercontig_183.5;prot=eq;transcript=eq - supercontig_183 No
CR06G05530 cre name=estExt_fgenesh2_kg.C_30007;pid=182256;prot=eq;tid=182256;transcript=eq + chromosome_6 No
FV4G23550 fve Protein gar2 (probable) transcript=eq;prot=eq;pid=gene00819 - LG4 No
GM11G10790 gma 11 pid=16283407;transcript=eq;prot=eq;name=Glyma11g10790.1 + Gm11 No
GM12G03070 gma 12 pid=16286191;transcript=eq;prot=eq;name=Glyma12g03070.1 + Gm12 No
LJ3G034860 lja prot=eq;transcript=eq;scaffold=CM0135;name=chr3.CM0135.140.nc - chr3 No
ME06303G00010 mes PACid=17977602;RNAname=cassava4.1_002678m;GeneName=cassava4.1_002678m.g;transcript=ne;prot=eq - scaffold06303 No
ME06902G00010 mes PACid=17966871;RNAname=cassava4.1_002431m;GeneName=cassava4.1_002431m.g;transcript=ne;prot=eq - scaffold06902 No
MT4G074800 mtr 28 kDa ribonucleoprotein, chloroplastic (AHRD V1 *--- P28644); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait transcript=eq;prot=eq;pid=Medtr4g074800.1; - 4 No
MT4G074930 mtr RNA-binding protein 34 (AHRD V1 *--- P42696); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait transcript=eq;prot=eq;pid=Medtr4g074930.1; - 4 No
OS04G52960 osa nucleolin, putative, expressed transcript=eq;prot=eq; + 4 No
OS08G09350 osa gar2, putative, expressed transcript=eq;prot=eq; - 8 No
OSINDICA_04G45090 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC018847; + Chr04 No
OSINDICA_08G07920 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC025446; - Chr08 No
PP00028G00650 ppa NULL name=fgenesh1_pg.scaffold_28000072,pid=70467,prot=eq,tid=70467 - scaffold_28 No
PP00118G00250 ppa NULL name=estExt_gwp_gw1.C_1180012,pid=188347,prot=eq,tid=188347 - scaffold_118 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier