Sub-family  

Parent family
HOM001769
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO002249 has 33 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G08020 aly name=fgenesh2_kg.6__796__AT5G08300.1;pid=487662;prot=eq;tid=487662 + scaffold_6 No
AL6G23020 aly name=fgenesh2_kg.6__2318__AT5G23250.1;pid=489184;prot=eq;tid=489184 + scaffold_6 No
AT5G08300 ath Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, metal ion binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), CoA-binding (InterPro:IPR003781), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G23250.1); Has 9706 Blast hits to 9705 proteins in 2093 species: Archae - 338; Bacteria - 4848; Metazoa - 444; Fungi - 287; Plants - 143; Viruses - 0; Other Eukaryotes - 3646 (source: NCBI BLink).;Succinyl-CoA ligase, alpha subunit transcript=eq;prot=eq; + 5 No
AT5G23250 ath Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G08300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Succinyl-CoA ligase, alpha subunit transcript=eq;prot=eq; + 5 No
BD1G23600 bdi succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity (Blast2GO) pid=Bradi1g23600.1;tid=Bradi1g23600.1;GeneName=Bradi1g23600;transcript=eq;prot=eq - Bd1 No
CP00000G01130 cpa name=evm.TU.supercontig_0.113;pid=evm.TU.supercontig_0.113;prot=eq;transcript=eq - supercontig_0 No
CR03G09360 cre name=MHS_estExt_GenewiseH_1.C_190100;pid=196570;prot=eq;tid=196575;transcript=eq + chromosome_3 No
GM09G29460 gma 09 pid=16276615;transcript=eq;prot=eq;name=Glyma09g29460.1 + Gm09 No
GM16G33870 gma 16 pid=16303786;transcript=eq;prot=eq;name=Glyma16g33870.1 + Gm16 No
LJ0G224150 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_072969;name=LjSGA_072969.1 - LjSGA_072969 No
LJ0G242870 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_080266;name=LjSGA_080266.1 - LjSGA_080266 No
ME02455G00010 mes PACid=17965517;RNAname=cassava4.1_010959m;GeneName=cassava4.1_010959m.g;transcript=eq;prot=eq - scaffold02455 No
MRCC299_01G00160 mrcc299 name=EuGene.0100010016;pid=54789;prot=eq;tid=54789;transcript=eq + Chr_01 No
MT6G077820 mtr Succinyl-CoA ligase (AHRD V1 **** B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit transcript=eq;prot=eq;pid=Medtr6g077820.1; - 6 No
OL03G05860 olu NULL name=eugene.0300010591,pid=30915,prot=eq,tid=30915 + Chr_3 No
OS07G38970 osa succinyl%2DCoA ligase subunit alpha%2D2, mitochondrial precursor, putative, expressed transcript=eq;prot=eq; + 7 No
OSINDICA_07G31320 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC024187; + Chr07 No
OT03G05850 ota putative succinyl-CoA ligase alpha subunit (ISS); name=OT03G05850;protein_id=CAL53236.1;prot=eq + chrom03 No
PP00058G00310 ppa NULL name=estExt_Genewise1.C_580043,pid=209911,prot=eq,tid=209911 + scaffold_58 No
PP00079G00990 ppa NULL name=estExt_Genewise1.C_790165,pid=212421,prot=eq,tid=212421 - scaffold_79 No
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