Sub-family  

Parent family
HOM000001
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO002186 has 33 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G41600 aly name=fgenesh2_kg.3__3603__AT2G20680.1;pid=480902;prot=eq;tid=480902 + scaffold_3 No
AL7G13520 aly name=fgenesh2_kg.7__1373__AT4G28320.1;pid=491940;prot=eq;tid=491940 + scaffold_7 No
AT2G20680 ath Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G28320.1); Has 827 Blast hits to 815 proteins in 205 species: Archae - 18; Bacteria - 244; Metazoa - 38; Fungi - 187; Plants - 310; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).;Glycosyl hydrolase superfamily protein transcript=eq;prot=eq; + 2 No
AT4G28320 ath Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT2G20680.1); Has 750 Blast hits to 740 proteins in 186 species: Archae - 6; Bacteria - 225; Metazoa - 0; Fungi - 183; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).;Glycosyl hydrolase superfamily protein transcript=eq;prot=eq; - 4 No
BD2G49680 bdi Glycosyl hydrolase (GH), subfamily GH5 pid=Bradi2g49680.1;tid=Bradi2g49680.1;GeneName=Bradi2g49680;Name=BdGH5_5;transcript=eq;prot=eq - Bd2 No
CP00034G01710 cpa name=evm.TU.supercontig_34.171;pid=evm.TU.supercontig_34.171;prot=eq;transcript=eq - supercontig_34 No
FV6G21510 fve Mannan endo-1,4-beta-mannosidase 2 (AtMAN2), Precursor (putative) transcript=eq;prot=eq;pid=gene17714 - LG6 No
GM06G44750 gma 06 pid=16265186;transcript=eq;prot=eq;name=Glyma06g44750.1 + Gm06 No
GM12G12770 gma 12 pid=16287292;transcript=eq;prot=eq;name=Glyma12g12770.1 - Gm12 No
GM12G33200 gma 12 pid=16288726;transcript=eq;prot=eq;name=Glyma12g33200.1 - Gm12 No
GM13G37250 gma 13 pid=16292916;transcript=eq;prot=eq;name=Glyma13g37250.1 + Gm13 No
LJ3G026820 lja prot=eq;transcript=eq;scaffold=CM0160;name=chr3.CM0160.300.nc - chr3 No
MD00G265310 mdo transcript=eq;prot=eq;pid=MDP0000322330;tid=MDP0000322330;contig=MDC011381.403 + MDC011381.403 No
MD00G309940 mdo transcript=eq;prot=eq;pid=MDP0000709705;tid=MDP0000709705;contig=MDC013167.140 + MDC013167.140 No
MD17G018050 mdo transcript=eq;prot=eq;pid=MDP0000417632;tid=MDP0000417632;contig=MDC013167.149 + 17 No
ME00070G00010 mes PACid=17986731;RNAname=cassava4.1_027705m;GeneName=cassava4.1_027705m.g;transcript=eq;prot=eq - scaffold00070 No
ME11689G00590 mes PACid=17992173;RNAname=cassava4.1_008068m;GeneName=cassava4.1_008068m.g;transcript=eq;prot=eq - scaffold11689 No
MRCC299_04G06020 mrcc299 name=EuGene.0400010614;pid=58085;prot=eq;tid=58085;transcript=eq + Chr_04 No
MT4G078230 mtr Mannan endo-1,4-beta-mannosidase 2 (AHRD V1 ***- Q7Y223); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 transcript=eq;prot=eq;pid=Medtr4g078230.1; - 4 No
OS01G54300 osa OsMan02 %2D Endo%2DBeta%2DMannanase transcript=eq;prot=eq; - 1 No
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