Sub-family  

Parent family
HOM000031
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (3 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO002126 has 33 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G34740 aly name=scaffold_103719.1;pid=890925;prot=eq;tid=922438 - scaffold_1 No
AL2G06560 aly name=fgenesh2_kg.2__470__AT1G59740.1;pid=475340;prot=eq;tid=475340 - scaffold_2 No
AT1G33440 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G59740.1); Has 6684 Blast hits to 6582 proteins in 1312 species: Archae - 0; Bacteria - 3263; Metazoa - 486; Fungi - 360; Plants - 2166; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; - 1 No
AT1G59740 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G33440.1); Has 6789 Blast hits to 6649 proteins in 1324 species: Archae - 0; Bacteria - 3372; Metazoa - 487; Fungi - 362; Plants - 2181; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 1 No
BD4G21790 bdi pid=Bradi4g21790.1;tid=Bradi4g21790.1;GeneName=Bradi4g21790;transcript=eq;prot=eq + Bd4 No
BD5G10920 bdi pid=Bradi5g10920.1;tid=Bradi5g10920.1;GeneName=Bradi5g10920;transcript=eq;prot=eq - Bd5 No
CP00173G00160 cpa name=evm.TU.supercontig_173.16;pid=evm.TU.supercontig_173.16;prot=eq;transcript=eq - supercontig_173 No
CP03525G00010 cpa name=evm.TU.supercontig_3525.1;pid=evm.TU.supercontig_3525.1;prot=eq;transcript=eq - supercontig_3525 No
FV2G16430 fve Peptide transporter PTR2 (probable) transcript=eq;prot=eq;pid=gene31180 - LG2 No
FV5G26500 fve Peptide transporter PTR1 (probable) transcript=eq;prot=eq;pid=gene29081 - LG5 No
GM07G40250 gma 07 pid=16269377;transcript=eq;prot=eq;name=Glyma07g40250.1 - Gm07 No
GM12G28510 gma 12 pid=16288176;transcript=eq;prot=eq;name=Glyma12g28510.1 + Gm12 No
GM17G00550 gma 17 pid=16303926;transcript=eq;prot=eq;name=Glyma17g00550.1 + Gm17 No
MD05G025940 mdo transcript=eq;prot=eq;pid=MDP0000500210;tid=MDP0000500210;contig=MDC020769.195 - 5 No
MD08G022920 mdo transcript=eq;prot=eq;pid=MDP0000231369;tid=MDP0000231369;contig=MDC009876.228 + 8 No
MD15G036410 mdo transcript=eq;prot=eq;pid=MDP0000232764;tid=MDP0000232764;contig=MDC011143.267 + 15 No
ME09151G00190 mes PACid=17964802;RNAname=cassava4.1_003811m;GeneName=cassava4.1_003811m.g;transcript=eq;prot=eq + scaffold09151 No
ME10469G00180 mes PACid=17978016;RNAname=cassava4.1_003848m;GeneName=cassava4.1_003848m.g;transcript=eq;prot=eq - scaffold10469 No
MT2G005130 mtr Peptide transporter PTR1 (AHRD V1 **** Q9M390); contains Interpro domain(s) IPR018456 TGF-beta receptor, type I/II extracellular region, conserved site transcript=eq;prot=eq;pid=Medtr2g005130.1; - 2 No
OS04G36040 osa peptide transporter PTR2, putative, expressed transcript=eq;prot=eq; - 4 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier