Sub-family  

Parent family
HOM000738
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO002004 has 34 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G06240 aly name=scaffold_400639.1;pid=901138;prot=eq;tid=932651 + scaffold_4 No
AL7G09540 aly name=scaffold_701000.1;pid=913258;prot=eq;tid=944771 - scaffold_7 No
AT4G31985 ath Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ribosomal protein L39 family protein transcript=eq;prot=eq; + 4 No
BD1G47500 bdi pid=Bradi1g47500.1;tid=Bradi1g47500.1;GeneName=Bradi1g47500;transcript=eq;prot=eq + Bd1 No
BD3G54170 bdi pid=Bradi3g54170.1;tid=Bradi3g54170.1;GeneName=Bradi3g54170;transcript=eq;prot=eq + Bd3 No
CP00532G00040 cpa name=evm.TU.supercontig_532.4;pid=evm.TU.supercontig_532.4;prot=eq;transcript=eq + supercontig_532 No
CR09G04060 cre name=estExt_gwp_1H.C_250043;pid=130723;prot=eq;tid=130723;transcript=eq + chromosome_9 No
FV1G03340 fve 60S ribosomal protein L39-1 (similar to) transcript=eq;prot=eq;pid=gene30868 + LG1 No
GM06G06790 gma 06 pid=16261974;transcript=eq;prot=eq;name=Glyma06g06790.1 + Gm06 No
LJ6G009020 lja prot=eq;transcript=eq;scaffold=CM0037;name=chr6.CM0037.1070.nc + chr6 No
MD00G045280 mdo transcript=eq;prot=eq;pid=MDP0000363784;tid=MDP0000363784;contig=MDC001915.90 - MDC001915.90 No
ME04043G01970 mes PACid=17987597;RNAname=cassava4.1_020756m;GeneName=cassava4.1_020756m.g;transcript=eq;prot=eq + scaffold04043 No
MRCC299_02G01310 mrcc299 name=EuGene.0200010819;pid=56442;prot=eq;tid=56442;transcript=eq - Chr_02 No
MT3G106310 mtr 60S ribosomal protein L39 (AHRD V1 ***- B6SP00_MAIZE); contains Interpro domain(s) IPR000077 Ribosomal protein L39e transcript=eq;prot=eq;pid=Medtr3g106310.1; + 3 No
OL03G03270 olu NULL name=eugene.0300010332,pid=30656,prot=eq,tid=30656 + Chr_3 No
OS02G55370 osa 60S ribosomal protein L39, putative, expressed transcript=eq;prot=eq; + 2 No
OS06G08320 osa 60S ribosomal protein L39, putative, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_02G53590 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC015715; + Chr02 No
OSINDICA_02G53610 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC015717; + Chr02 No
OSINDICA_06G07700 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009682; - Chr06 No
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