Sub-family  

Parent family
HOM000587
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO001987 has 34 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G11640 aly name=fgenesh2_kg.3__1163__AT3G11230.1;pid=478462;prot=eq;tid=478462 + scaffold_3 No
AL4G26790 aly name=scaffold_402781.1;pid=903280;prot=eq;tid=934793 + scaffold_4 No
AT2G40110 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT3G11230.2); Has 989 Blast hits to 989 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 470; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 2 No
AT3G11230 ath Yippee family putative zinc-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 983 Blast hits to 983 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 200; Plants - 237; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 3 No
BD1G11770 bdi pid=Bradi1g11770.1;tid=Bradi1g11770.1;GeneName=Bradi1g11770;transcript=eq;prot=eq - Bd1 No
CP00019G01830 cpa name=evm.TU.supercontig_19.184;pid=evm.TU.supercontig_19.184;prot=eq;transcript=eq + supercontig_19 No
FV7G29350 fve Protein yippee-like (putative) transcript=eq;prot=eq;pid=gene20959 - LG7 No
GM02G42360 gma 02 pid=16249903;transcript=eq;prot=eq;name=Glyma02g42360.1 - Gm02 No
GM11G35110 gma 11 pid=16285439;transcript=eq;prot=eq;name=Glyma11g35110.1 - Gm11 No
GM14G06540 gma 14 pid=16294583;transcript=eq;prot=eq;name=Glyma14g06540.1 + Gm14 No
LJ0G117550 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_037055;name=LjSGA_037055.1 + LjSGA_037055 No
MD00G074370 mdo transcript=eq;prot=eq;pid=MDP0000168459;tid=MDP0000168459;contig=MDC003094.155 + MDC003094.155 No
MD00G144260 mdo transcript=eq;prot=eq;pid=MDP0000070128;tid=MDP0000070128;contig=MDC006190.301 + MDC006190.301 No
MD04G001750 mdo transcript=eq;prot=eq;pid=MDP0000329428;tid=MDP0000329428;contig=MDC005050.92 - 4 No
MD04G012220 mdo transcript=eq;prot=eq;pid=MDP0000757638;tid=MDP0000757638;contig=MDC009757.32 - 4 No
MD12G017350 mdo transcript=eq;prot=eq;pid=MDP0000164749;tid=MDP0000164749;contig=MDC001777.151 - 12 No
ME08265G03140 mes PACid=17989005;RNAname=cassava4.1_023907m;GeneName=cassava4.1_023907m.g;transcript=eq;prot=eq - scaffold08265 No
ME10689G00890 mes PACid=17983188;RNAname=cassava4.1_018407m;GeneName=cassava4.1_018407m.g;transcript=eq;prot=eq + scaffold10689 No
MT3G070330 mtr Protein yippee-like (AHRD V1 ***- P59234); contains Interpro domain(s) IPR004910 Yippee-like protein transcript=eq;prot=eq;pid=Medtr3g070330.1; - 3 No
MT5G082490 mtr Yippee-like protein (AHRD V1 ***- A9QXI3_SOLTU); contains Interpro domain(s) IPR004910 Yippee-like protein transcript=eq;prot=eq;pid=Medtr5g082490.1; - 5 No
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