Sub-family  

Parent family
HOM000739
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO001954 has 34 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G32170 aly name=fgenesh2_kg.1__3276__ATCG00800.1;pid=473322;prot=eq;tid=473322 + scaffold_1 No
AL2G09900 aly name=fgenesh2_kg.2__679__ATCG00800.1;pid=475549;prot=eq;tid=475549 + scaffold_2 No
ATCG00800 ath encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex;structural constituent of ribosome transcript=eq;prot=eq; - chloroplast No
BDCG00780 bdi rps3;ribosomal protein S3;protein_id=ACF08676.1; transl_table=11; - chloroplast No
CPCG00810 cpa rps3;ribosomal protein S3;protein_id=ABY86821.1; transl_table=11; - chloroplast No
CRCG00670 cre rps3;ribosomal protein S3;protein_id=DAA00947.1; atypical; putative;transl_table=11; + chloroplast No
GMCG00800 gma rps3;ribosomal protein S3;protein_id=ABC25161.1; transl_table=11; - chloroplast No
LJ0G092170 lja prot=eq;transcript=eq;scaffold=LjSGA_030023;name=LjSGA_030023.1.2 + LjSGA_030023 No
LJ0G320840 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_112701;name=LjSGA_112701.1 - LjSGA_112701 No
LJ0G335320 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_118901;name=LjSGA_118901.1 - LjSGA_118901 No
LJ0G358130 lja prot=eq;transcript=eq;scaffold=LjSGA_128247;name=LjSGA_128247.1 + LjSGA_128247 No
LJCG00800 lja rps3;ribosomal protein S3;protein_id=BAB33234.1; transl_table=11; - chloroplast No
MD14G015200 mdo transcript=eq;prot=eq;pid=MDP0000361244;tid=MDP0000361244;contig=MDC043675.12 - 14 No
ME04355G00010 mes PACid=17972342;RNAname=cassava4.1_020914m;GeneName=cassava4.1_020914m.g;transcript=ne;prot=eq + scaffold04355 No
MECG00850 mes rps3;ribosomal protein S3;protein_id=ABV66192.1; transl_table=11; - chloroplast No
MRCC299_CG00470 mrcc299 small subunit ribosomal protein S3;protein_id=ACO55556.1; transl_table=11; - chloroplast No
MT4G034740 mtr 30S ribosomal protein S3 chloroplastic (AHRD V1 ***- C6GJ93_BAMOL); contains Interpro domain(s) IPR005704 Ribosomal protein S3, bacterial transcript=eq;prot=eq;pid=Medtr4g034740.1; + 4 No
MT4G051410 mtr 30S ribosomal protein S3 chloroplastic (AHRD V1 ***- B5LMR1_CICAR); contains Interpro domain(s) IPR005704 Ribosomal protein S3, bacterial transcript=eq;prot=eq;pid=Medtr4g051410.1; - 4 No
OS04G16824 osa chloroplast 30S ribosomal protein S3, putative transcript=eq;prot=eq; + 4 No
OS09G24416 osa chloroplast 30S ribosomal protein S3, putative transcript=eq;prot=eq; + 9 No
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