Sub-family 
- Id
- ORTHO001948
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000471
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (1 gene)
- mtr
- Medicago truncatula (2 genes)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO001948 has 34 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO001948
Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G25920 | aly | name=scaffold_102753.1;pid=889959;prot=eq;tid=921472 | - | scaffold_1 | No | |
| AL2G18560 | aly | name=fgenesh2_kg.2__1271__AT1G70170.1;pid=476141;prot=eq;tid=476141 | + | scaffold_2 | No | |
| AT1G24140 | ath | Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT1G70170.1); Has 2621 Blast hits to 2428 proteins in 195 species: Archae - 3; Bacteria - 89; Metazoa - 2200; Fungi - 4; Plants - 185; Viruses - 42; Other Eukaryotes - 98 (source: NCBI BLink).;Matrixin family protein | transcript=eq;prot=eq; | - | 1 | No |
| AT1G70170 | ath | mutant has Late flowering; Early senescence; Matrix Metalloproteinase;matrix metalloproteinase | transcript=eq;prot=eq; | + | 1 | No |
| BD1G44690 | bdi | serine-type endopeptidase activity, metalloendopeptidase activity (Blast2GO) | pid=Bradi1g44690.1;tid=Bradi1g44690.1;GeneName=Bradi1g44690;transcript=eq;prot=eq | - | Bd1 | No |
| BD3G59680 | bdi | metalloendopeptidase activity (Blast2GO) | pid=Bradi3g59680.1;tid=Bradi3g59680.1;GeneName=Bradi3g59680;transcript=eq;prot=eq | + | Bd3 | No |
| CP00005G03280 | cpa | name=evm.TU.supercontig_5.328;pid=evm.TU.supercontig_5.328;prot=eq;transcript=eq | + | supercontig_5 | No | |
| FV4G22500 | fve | Metalloendoproteinase 1, Precursor (similar to) | transcript=eq;prot=eq;pid=gene00722 | - | LG4 | No |
| GM01G04380 | gma | 01 | pid=16243380;transcript=eq;prot=eq;name=Glyma01g04380.1 | - | Gm01 | No |
| GM02G03190 | gma | 02 | pid=16246815;transcript=eq;prot=eq;name=Glyma02g03190.1 | + | Gm02 | No |
| GM08G40300 | gma | 08 | pid=16273348;transcript=eq;prot=eq;name=Glyma08g40300.1 | - | Gm08 | No |
| GM18G17380 | gma | 18 | pid=16309040;transcript=eq;prot=eq;name=Glyma18g17380.1 | + | Gm18 | No |
| LJ2G016950 | lja | prot=eq;transcript=eq;scaffold=CM1150;name=chr2.CM1150.540.nd | - | chr2 | No | |
| LJ3G009450 | lja | prot=eq;transcript=eq;scaffold=CM0279;name=chr3.CM0279.220.nc | - | chr3 | No | |
| MD00G150420 | mdo | transcript=eq;prot=eq;pid=MDP0000687738;tid=MDP0000687738;contig=MDC006465.421 | - | MDC006465.421 | No | |
| MD13G005880 | mdo | transcript=eq;prot=eq;pid=MDP0000221075;tid=MDP0000221075;contig=MDC020206.60 | + | 13 | No | |
| MD13G005900 | mdo | transcript=eq;prot=eq;pid=MDP0000786392;tid=MDP0000786392;contig=MDC020206.60 | + | 13 | No | |
| ME11495G01130 | mes | PACid=17988336;RNAname=cassava4.1_029799m;GeneName=cassava4.1_029799m.g;transcript=ne;prot=eq | + | scaffold11495 | No | |
| MT5G036410 | mtr | Matrix metalloproteinase-9 (AHRD V1 *-*- P41246); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin | transcript=eq;prot=eq;pid=Medtr5g036410.1; | - | 5 | No |
| MT8G062770 | mtr | Matrix metalloproteinase-9 (AHRD V1 *--- P41246); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin | transcript=eq;prot=eq;pid=Medtr8g062770.1; | + | 8 | No |