Sub-family  

Parent family
HOM000471
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO001948 has 34 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G25920 aly name=scaffold_102753.1;pid=889959;prot=eq;tid=921472 - scaffold_1 No
AL2G18560 aly name=fgenesh2_kg.2__1271__AT1G70170.1;pid=476141;prot=eq;tid=476141 + scaffold_2 No
AT1G24140 ath Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT1G70170.1); Has 2621 Blast hits to 2428 proteins in 195 species: Archae - 3; Bacteria - 89; Metazoa - 2200; Fungi - 4; Plants - 185; Viruses - 42; Other Eukaryotes - 98 (source: NCBI BLink).;Matrixin family protein transcript=eq;prot=eq; - 1 No
AT1G70170 ath mutant has Late flowering; Early senescence; Matrix Metalloproteinase;matrix metalloproteinase transcript=eq;prot=eq; + 1 No
BD1G44690 bdi serine-type endopeptidase activity, metalloendopeptidase activity (Blast2GO) pid=Bradi1g44690.1;tid=Bradi1g44690.1;GeneName=Bradi1g44690;transcript=eq;prot=eq - Bd1 No
BD3G59680 bdi metalloendopeptidase activity (Blast2GO) pid=Bradi3g59680.1;tid=Bradi3g59680.1;GeneName=Bradi3g59680;transcript=eq;prot=eq + Bd3 No
CP00005G03280 cpa name=evm.TU.supercontig_5.328;pid=evm.TU.supercontig_5.328;prot=eq;transcript=eq + supercontig_5 No
FV4G22500 fve Metalloendoproteinase 1, Precursor (similar to) transcript=eq;prot=eq;pid=gene00722 - LG4 No
GM01G04380 gma 01 pid=16243380;transcript=eq;prot=eq;name=Glyma01g04380.1 - Gm01 No
GM02G03190 gma 02 pid=16246815;transcript=eq;prot=eq;name=Glyma02g03190.1 + Gm02 No
GM08G40300 gma 08 pid=16273348;transcript=eq;prot=eq;name=Glyma08g40300.1 - Gm08 No
GM18G17380 gma 18 pid=16309040;transcript=eq;prot=eq;name=Glyma18g17380.1 + Gm18 No
LJ2G016950 lja prot=eq;transcript=eq;scaffold=CM1150;name=chr2.CM1150.540.nd - chr2 No
LJ3G009450 lja prot=eq;transcript=eq;scaffold=CM0279;name=chr3.CM0279.220.nc - chr3 No
MD00G150420 mdo transcript=eq;prot=eq;pid=MDP0000687738;tid=MDP0000687738;contig=MDC006465.421 - MDC006465.421 No
MD13G005880 mdo transcript=eq;prot=eq;pid=MDP0000221075;tid=MDP0000221075;contig=MDC020206.60 + 13 No
MD13G005900 mdo transcript=eq;prot=eq;pid=MDP0000786392;tid=MDP0000786392;contig=MDC020206.60 + 13 No
ME11495G01130 mes PACid=17988336;RNAname=cassava4.1_029799m;GeneName=cassava4.1_029799m.g;transcript=ne;prot=eq + scaffold11495 No
MT5G036410 mtr Matrix metalloproteinase-9 (AHRD V1 *-*- P41246); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin transcript=eq;prot=eq;pid=Medtr5g036410.1; - 5 No
MT8G062770 mtr Matrix metalloproteinase-9 (AHRD V1 *--- P41246); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin transcript=eq;prot=eq;pid=Medtr8g062770.1; + 8 No
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