Sub-family  

Parent family
HOM000283
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO001898 has 35 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G02070 aly name=scaffold_800214.1;pid=916814;prot=eq;tid=948327 + scaffold_8 No
AT5G46210 ath Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.;cullin4 transcript=eq;prot=eq; - 5 No
BD1G06387 bdi pid=Bradi1g06387.1;tid=Bradi1g06387.1;GeneName=Bradi1g06387;transcript=eq;prot=eq - Bd1 No
CP00166G00010 cpa name=evm.TU.supercontig_166.1;pid=evm.TU.supercontig_166.1;prot=eq;transcript=eq + supercontig_166 No
CP00878G00010 cpa name=evm.TU.supercontig_878.1;pid=evm.TU.supercontig_878.1;prot=eq;transcript=eq - supercontig_878 No
CR12G06900 cre name=estExt_gwp_1H.C_890007;pid=133199;prot=eq;tid=133199;transcript=eq + chromosome_12 No
FV3G05330 fve Cullin-4B (CUL-4B) (similar to) transcript=eq;prot=eq;pid=gene30611 + LG3 No
GM05G27240 gma 05 pid=16259797;transcript=eq;prot=eq;name=Glyma05g27240.1 + Gm05 No
GM08G10180 gma 08 pid=16270625;transcript=eq;prot=eq;name=Glyma08g10180.1 + Gm08 No
GM13G29010 gma 13 pid=16291941;transcript=eq;prot=eq;name=Glyma13g29010.1 + Gm13 No
GM15G10030 gma 15 pid=16298264;transcript=eq;prot=eq;name=Glyma15g10030.1 - Gm15 No
LJ0G119880 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_037738;name=LjSGA_037738.1 + LjSGA_037738 No
MD00G044260 mdo transcript=eq;prot=eq;pid=MDP0000119995;tid=MDP0000119995;contig=MDC001856.160 - MDC001856.160 No
MD05G007560 mdo transcript=eq;prot=eq;pid=MDP0000231452;tid=MDP0000231452;contig=MDC014164.256 + 5 No
MD10G020800 mdo transcript=eq;prot=eq;pid=MDP0000130227;tid=MDP0000130227;contig=MDC018051.171 - 10 No
ME03859G00210 mes PACid=17972282;RNAname=cassava4.1_001775m;GeneName=cassava4.1_001776m.g;transcript=ne;prot=eq - scaffold03859 No
ME04251G00590 mes PACid=17970385;RNAname=cassava4.1_001768m;GeneName=cassava4.1_001768m.g;transcript=eq;prot=eq - scaffold04251 No
MRCC299_09G06010 mrcc299 name=e_gw2.09.53.1;pid=84769;prot=eq;tid=84769;transcript=eq - Chr_09 No
MT2G019260 mtr Cullin 4 (AHRD V1 ***- A9LK40_SOLLC); contains Interpro domain(s) IPR001373 Cullin, N-terminal transcript=eq;prot=eq;pid=Medtr2g019260.1; - 2 No
OL04G00430 olu NULL name=estExt_GenewiseEukaryote.C_Chr_40073,pid=45419,prot=eq,tid=45419 + Chr_4 No
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