Sub-family  

Parent family
HOM000163
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (11 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO001877 has 35 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G08930 aly name=fgenesh2_kg.6__872__AT5G09280.1;pid=487738;prot=eq;tid=487738 - scaffold_6 No
AT5G09280 ath Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G30350.1); Has 1558 Blast hits to 1550 proteins in 258 species: Archae - 0; Bacteria - 650; Metazoa - 0; Fungi - 219; Plants - 684; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Pectin lyase-like superfamily protein transcript=eq;prot=eq; - 5 No
CP00042G01830 cpa name=evm.TU.supercontig_42.183;pid=evm.TU.supercontig_42.183;prot=eq;transcript=eq + supercontig_42 No
CP00051G00170 cpa name=evm.TU.supercontig_51.17;pid=evm.TU.supercontig_51.17;prot=eq;transcript=eq - supercontig_51 No
FV5G27430 fve Probable pectate lyase 16, Precursor transcript=eq;prot=eq;pid=gene29291 + LG5 No
GM01G38540 gma 01 pid=16245616;transcript=eq;prot=eq;name=Glyma01g38540.1 + Gm01 No
GM13G21880 gma 13 pid=16291125;transcript=eq;prot=eq;name=Glyma13g21880.1 - Gm13 No
GM16G25710 gma 16 pid=16302887;transcript=eq;prot=eq;name=Glyma16g25710.1 + Gm16 No
LJ2G021500 lja prot=eq;transcript=eq;scaffold=CM0803;name=chr2.CM0803.1020.nd - chr2 No
LJ2G024820 lja prot=eq;transcript=eq;scaffold=CM0323;name=chr2.CM0323.410.nd + chr2 No
MD00G038930 mdo transcript=eq;prot=eq;pid=MDP0000233331;tid=MDP0000233331;contig=MDC001655.638 + MDC001655.638 No
MD12G018710 mdo transcript=eq;prot=eq;pid=MDP0000244018;tid=MDP0000244018;contig=MDC018186.206 - 12 No
ME02895G00440 mes PACid=17988245;RNAname=cassava4.1_025601m;GeneName=cassava4.1_025601m.g;transcript=eq;prot=eq + scaffold02895 No
ME08994G00160 mes PACid=17990381;RNAname=cassava4.1_024289m;GeneName=cassava4.1_024289m.g;transcript=eq;prot=eq + scaffold08994 No
MT3G030900 mtr Major pollen allergen-like protein (AHRD V1 ***- Q9FY87_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen transcript=eq;prot=eq;pid=Medtr3g030900.1; - 3 No
MT4G064420 mtr Major pollen allergen-like protein (AHRD V1 *-*- Q9FY87_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen transcript=eq;prot=eq;pid=Medtr4g064420.1; + 4 No
MT5G019060 mtr Major pollen allergen-like protein (AHRD V1 ***- Q9FY87_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen transcript=eq;prot=eq;pid=Medtr5g019060.1; - 5 No
MT5G019090 mtr Major pollen allergen-like protein (AHRD V1 ***- Q9FY87_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen transcript=eq;prot=eq;pid=Medtr5g019090.1; - 5 No
MT5G019160 mtr Major pollen allergen-like protein (AHRD V1 ***- Q9FY87_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen transcript=eq;prot=eq;pid=Medtr5g019160.1; + 5 No
MT5G019170 mtr Major pollen allergen-like protein (AHRD V1 *-*- Q9FY87_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen transcript=eq;prot=eq;pid=Medtr5g019170.1; + 5 No
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