Sub-family 
- Id
- ORTHO001829
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000079
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (3 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (1 gene)
- mtr
- Medicago truncatula (2 genes)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (3 genes)
The gene family ORTHO001829 has 35 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO001829
Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G21690 | aly | name=fgenesh2_kg.3__2214__AT3G19950.1;pid=479513;prot=eq;tid=479513 | + | scaffold_3 | No | |
| AT3G19950 | ath | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).;RING/U-box superfamily protein | transcript=eq;prot=eq; | + | 3 | No |
| BD1G52440 | bdi | RING, subfamily zinc finger, C3HC4 type domain containing protein | pid=Bradi1g52440.1;tid=Bradi1g52440.1;GeneName=Bradi1g52440;transcript=eq;prot=eq | + | Bd1 | No |
| BD3G29400 | bdi | RING, subfamily zinc finger (C3HC4-type RING finger) family protein | pid=Bradi3g29400.1;tid=Bradi3g29400.1;GeneName=Bradi3g29400;transcript=eq;prot=eq | - | Bd3 | No |
| CP00206G00030 | cpa | name=evm.TU.supercontig_206.3;pid=evm.TU.supercontig_206.3;prot=eq;transcript=eq | - | supercontig_206 | No | |
| CP00854G00030 | cpa | name=evm.TU.supercontig_854.3;pid=evm.TU.supercontig_854.3;prot=eq;transcript=eq | + | supercontig_854 | No | |
| CP01257G00010 | cpa | name=evm.TU.supercontig_1257.1;pid=evm.TU.supercontig_1257.1;prot=eq;transcript=eq | + | supercontig_1257 | No | |
| FV5G15530 | fve | E3 ubiquitin-protein ligase CIP8 (similar to) | transcript=eq;prot=eq;pid=gene09176 | - | LG5 | No |
| GM09G29490 | gma | 09 | pid=16276618;transcript=eq;prot=eq;name=Glyma09g29490.1 | - | Gm09 | No |
| GM16G33900 | gma | 16 | pid=16303789;transcript=eq;prot=eq;name=Glyma16g33900.1 | - | Gm16 | No |
| LJ2G005440 | lja | prot=eq;transcript=eq;scaffold=LjT37J22;name=chr2.LjT37J22.30.nd | - | chr2 | No | |
| MD00G496660 | mdo | transcript=eq;prot=eq;pid=MDP0000253821;tid=MDP0000253821;contig=MDC025446.44 | - | MDC025446.44 | No | |
| MD00G505930 | mdo | transcript=eq;prot=eq;pid=MDP0000226252;tid=MDP0000226252;contig=MDC029183.34 | + | MDC029183.34 | No | |
| MD14G022830 | mdo | transcript=eq;prot=eq;pid=MDP0000782661;tid=MDP0000782661;contig=MDC004082.149 | - | 14 | No | |
| ME12022G00010 | mes | PACid=17978907;RNAname=cassava4.1_034211m;GeneName=cassava4.1_034211m.g;transcript=eq;prot=eq | + | scaffold12022 | No | |
| MT6G077700 | mtr | RING finger protein 126 (AHRD V1 *--- Q9BV68); contains Interpro domain(s) IPR001841 Zinc finger, RING-type | transcript=eq;prot=eq;pid=Medtr6g077700.1; | + | 6 | No |
| MT6G079660 | mtr | RING finger protein 126 (AHRD V1 *--- Q9BV68); contains Interpro domain(s) IPR001841 Zinc finger, RING-type | transcript=eq;prot=eq;pid=Medtr6g079660.1; | - | 6 | No |
| OS06G01200 | osa | zinc finger, C3HC4 type domain containing protein, expressed | transcript=eq;prot=eq; | + | 6 | No |
| OS10G34590 | osa | zinc finger, C3HC4 type domain containing protein, expressed | transcript=eq;prot=eq; | - | 10 | No |
| OSINDICA_06G00100 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC009132; | + | Chr06 | No |