Sub-family  

Parent family
HOM000079
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family ORTHO001829 has 35 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G21690 aly name=fgenesh2_kg.3__2214__AT3G19950.1;pid=479513;prot=eq;tid=479513 + scaffold_3 No
AT3G19950 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
BD1G52440 bdi RING, subfamily zinc finger, C3HC4 type domain containing protein pid=Bradi1g52440.1;tid=Bradi1g52440.1;GeneName=Bradi1g52440;transcript=eq;prot=eq + Bd1 No
BD3G29400 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi3g29400.1;tid=Bradi3g29400.1;GeneName=Bradi3g29400;transcript=eq;prot=eq - Bd3 No
CP00206G00030 cpa name=evm.TU.supercontig_206.3;pid=evm.TU.supercontig_206.3;prot=eq;transcript=eq - supercontig_206 No
CP00854G00030 cpa name=evm.TU.supercontig_854.3;pid=evm.TU.supercontig_854.3;prot=eq;transcript=eq + supercontig_854 No
CP01257G00010 cpa name=evm.TU.supercontig_1257.1;pid=evm.TU.supercontig_1257.1;prot=eq;transcript=eq + supercontig_1257 No
FV5G15530 fve E3 ubiquitin-protein ligase CIP8 (similar to) transcript=eq;prot=eq;pid=gene09176 - LG5 No
GM09G29490 gma 09 pid=16276618;transcript=eq;prot=eq;name=Glyma09g29490.1 - Gm09 No
GM16G33900 gma 16 pid=16303789;transcript=eq;prot=eq;name=Glyma16g33900.1 - Gm16 No
LJ2G005440 lja prot=eq;transcript=eq;scaffold=LjT37J22;name=chr2.LjT37J22.30.nd - chr2 No
MD00G496660 mdo transcript=eq;prot=eq;pid=MDP0000253821;tid=MDP0000253821;contig=MDC025446.44 - MDC025446.44 No
MD00G505930 mdo transcript=eq;prot=eq;pid=MDP0000226252;tid=MDP0000226252;contig=MDC029183.34 + MDC029183.34 No
MD14G022830 mdo transcript=eq;prot=eq;pid=MDP0000782661;tid=MDP0000782661;contig=MDC004082.149 - 14 No
ME12022G00010 mes PACid=17978907;RNAname=cassava4.1_034211m;GeneName=cassava4.1_034211m.g;transcript=eq;prot=eq + scaffold12022 No
MT6G077700 mtr RING finger protein 126 (AHRD V1 *--- Q9BV68); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=Medtr6g077700.1; + 6 No
MT6G079660 mtr RING finger protein 126 (AHRD V1 *--- Q9BV68); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=Medtr6g079660.1; - 6 No
OS06G01200 osa zinc finger, C3HC4 type domain containing protein, expressed transcript=eq;prot=eq; + 6 No
OS10G34590 osa zinc finger, C3HC4 type domain containing protein, expressed transcript=eq;prot=eq; - 10 No
OSINDICA_06G00100 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009132; + Chr06 No
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