Sub-family  

Parent family
HOM000200
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family ORTHO001791 has 35 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G36680 aly name=Al_scaffold_0001_3610;pid=881843;prot=eq;tid=913356 - scaffold_1 No
AL1G36690 aly name=fgenesh2_kg.1__3599__AT1G31280.1;pid=473645;prot=eq;tid=473645 - scaffold_1 No
AT1G31280 ath An Argonaute gene;Argonaute family protein transcript=eq;prot=eq; + 1 No
AT1G31290 ath ARGONAUTE 3 (AGO3); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT1G31280.1); Has 87664 Blast hits to 32385 proteins in 1910 species: Archae - 110; Bacteria - 26465; Metazoa - 27622; Fungi - 6311; Plants - 10699; Viruses - 1201; Other Eukaryotes - 15256 (source: NCBI BLink).;ARGONAUTE 3 transcript=eq;prot=eq; + 1 No
BD5G21800 bdi Argonaute (AGO) Family, subfamily AGO2/3 pid=Bradi5g21800.1;tid=Bradi5g21800.1;GeneName=Bradi5g21800;Name=BdAGO2;transcript=eq;prot=eq + Bd5 No
BD5G21810 bdi Argonaute (AGO) Family, subfamily AGO2/3 pid=Bradi5g21810.1;tid=Bradi5g21810.1;GeneName=Bradi5g21810;Name=BdAGO3;transcript=eq;prot=eq + Bd5 No
CP00135G00410 cpa name=evm.TU.supercontig_135.41;pid=evm.TU.supercontig_135.41;prot=eq;transcript=eq + supercontig_135 No
FV3G10370 fve Protein argonaute 2 (OsAGO2) (probable) transcript=eq;prot=eq;pid=gene20067 - LG3 No
GM09G02360 gma 09 pid=16274528;transcript=eq;prot=eq;name=Glyma09g02360.1 - Gm09 No
GM15G13260 gma 15 pid=16298640;transcript=eq;prot=eq;name=Glyma15g13260.1 - Gm15 No
GM20G02820 gma 20 pid=16315313;transcript=eq;prot=eq;name=Glyma20g02820.1 - Gm20 No
LJ4G009020 lja prot=eq;transcript=eq;scaffold=CM0229;name=chr4.CM0229.30.nc - chr4 No
MD00G038740 mdo transcript=eq;prot=eq;pid=MDP0000265219;tid=MDP0000265219;contig=MDC001643.338 - MDC001643.338 No
MD05G008480 mdo transcript=eq;prot=eq;pid=MDP0000260407;tid=MDP0000260407;contig=MDC013737.148 - 5 No
MD10G019390 mdo transcript=eq;prot=eq;pid=MDP0000292511;tid=MDP0000292511;contig=MDC013737.149 + 10 No
ME02165G00010 mes PACid=17961325;RNAname=cassava4.1_000920m;GeneName=cassava4.1_000920m.g;transcript=eq;prot=eq - scaffold02165 No
ME06914G01390 mes PACid=17962455;RNAname=cassava4.1_001630m;GeneName=cassava4.1_001630m.g;transcript=eq;prot=eq - scaffold06914 No
MT2G028910 mtr Protein argonaute 2 (AHRD V1 ***- Q7XTS4); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi transcript=eq;prot=eq;pid=Medtr2g028910.1; - 2 No
MT4G083610 mtr Protein argonaute 2 (AHRD V1 ***- Q7XTS4); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi transcript=eq;prot=eq;pid=Medtr4g083610.1; - 4 No
OS04G52550 osa PAZ domain%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; + 4 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier