Sub-family  

Parent family
HOM001089
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family ORTHO001774 has 35 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08200 aly name=fgenesh2_kg.1__869__AT1G08540.1;pid=470915;prot=eq;tid=470915 + scaffold_1 No
AT1G08540 ath Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.;RNApolymerase sigma subunit 2 transcript=eq;prot=eq; + 1 No
BD1G66830 bdi pid=Bradi1g66830.1;tid=Bradi1g66830.1;GeneName=Bradi1g66830;transcript=eq;prot=eq - Bd1 No
BD4G19540 bdi protein disulfide oxidoreductase activity (Blast2GO) pid=Bradi4g19540.1;tid=Bradi4g19540.1;GeneName=Bradi4g19540;transcript=eq;prot=eq - Bd4 No
CP00073G00280 cpa name=evm.TU.supercontig_73.28;pid=evm.TU.supercontig_73.28;prot=eq;transcript=eq + supercontig_73 No
CR03G09640 cre name=estExt_fgenesh2_pg.C_190061;pid=190458;prot=eq;tid=190458;transcript=eq - chromosome_3 No
FV6G26320 fve RNA polymerase sigma factor rpoD (Sigma-A) (probable) transcript=eq;prot=eq;pid=gene17946 + LG6 No
GM04G00330 gma 04 pid=16254327;transcript=eq;prot=eq;name=Glyma04g00330.1 + Gm04 No
LJ1G033040 lja partial;prot=eq;transcript=eq;scaffold=CM0017;name=chr1.CM0017.250.nc - chr1 No
MD14G010860 mdo transcript=eq;prot=eq;pid=MDP0000157652;tid=MDP0000157652;contig=MDC002131.389 - 14 No
ME11297G01040 mes PACid=17969314;RNAname=cassava4.1_004371m;GeneName=cassava4.1_004371m.g;transcript=eq;prot=eq + scaffold11297 No
MRCC299_04G05310 mrcc299 name=fgenesh2_pg.C_Chr_04000345;pid=100150;prot=eq;tid=100150;transcript=eq - Chr_04 No
MT3G118290 mtr RNA polymerase sigma factor rpoD (AHRD V1 *-*- P26683); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid transcript=eq;prot=eq;pid=Medtr3g118290.1; - 3 No
OL06G01000 olu NULL name=e_gwEuk.6.682.1,pid=41331,prot=eq,tid=41331 - Chr_6 No
OS03G16430 osa RNA polymerase sigma factor, putative, expressed transcript=eq;prot=eq; + 3 No
OS11G26160 osa RNA polymerase sigma factor, putative, expressed transcript=eq;prot=eq; + 11 No
OSINDICA_03G14820 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC005957; + Chr03 No
OSINDICA_04G04650 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC016241; + Chr04 No
OT06G01190 ota SigA (ISS); name=OT06G01190;protein_id=CAL53378.1;prot=eq - chrom06 No
PP00007G01470 ppa NULL name=e_gw1.7.4.1,pid=113461,prot=eq,tid=113461 - scaffold_7 No
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