Sub-family  

Parent family
HOM000068
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO001746 has 36 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G07600 aly name=scaffold_800799.1;pid=917399;prot=eq;tid=948912 + scaffold_8 No
AT1G45050 ath member of ubiquitin-conjugating E2-proteins;Ubiquitin-conjugating enzyme family protein transcript=eq;prot=eq; + 1 No
AT1G75440 ath ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 18 (TAIR:AT5G42990.1); Has 8796 Blast hits to 8793 proteins in 382 species: Archae - 0; Bacteria - 2; Metazoa - 3895; Fungi - 1929; Plants - 1614; Viruses - 20; Other Eukaryotes - 1336 (source: NCBI BLink).;ubiquitin-conjugating enzyme 16 transcript=eq;prot=eq; + 1 No
AT5G42990 ath ubiquitin-conjugating enzyme 18 (UBC18); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT1G45050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;ubiquitin-conjugating enzyme 18 transcript=eq;prot=eq; - 5 No
BD1G12480 bdi ISG15 ligase activity, ubiquitin-protein ligase activity, SUMO ligase activity (Blast2GO) pid=Bradi1g12480.1;tid=Bradi1g12480.1;GeneName=Bradi1g12480;transcript=eq;prot=eq + Bd1 No
BD4G00660 bdi ISG15 ligase activity, ubiquitin-protein ligase activity, SUMO ligase activity (Blast2GO) pid=Bradi4g00660.1;tid=Bradi4g00660.1;GeneName=Bradi4g00660;transcript=eq;prot=eq + Bd4 No
CP00006G01800 cpa name=evm.TU.supercontig_6.181;pid=evm.TU.supercontig_6.181;prot=eq;transcript=eq - supercontig_6 No
CR02G14630 cre name=estExt_fgenesh1_pm.C_chromosome_20753;pid=377402;prot=eq;tid=377409;transcript=eq - chromosome_2 No
GM01G37480 gma 01 pid=16245484;transcript=eq;prot=eq;name=Glyma01g37480.1 - Gm01 No
GM11G07810 gma 11 pid=16283053;transcript=eq;prot=eq;name=Glyma11g07810.1 + Gm11 No
LJ2G022930 lja prot=eq;transcript=eq;scaffold=CM0249;name=chr2.CM0249.340.nd + chr2 No
MD00G081470 mdo transcript=eq;prot=eq;pid=MDP0000236849;tid=MDP0000236849;contig=MDC003445.197 - MDC003445.197 No
MD00G302890 mdo transcript=eq;prot=eq;pid=MDP0000202155;tid=MDP0000202155;contig=MDC012866.392 - MDC012866.392 No
MD12G015390 mdo transcript=eq;prot=eq;pid=MDP0000139433;tid=MDP0000139433;contig=MDC009708.152 - 12 No
ME06512G00560 mes PACid=17966280;RNAname=cassava4.1_017994m;GeneName=cassava4.1_017994m.g;transcript=eq;prot=eq - scaffold06512 No
ME09657G00080 mes PACid=17969678;RNAname=cassava4.1_017997m;GeneName=cassava4.1_017997m.g;transcript=eq;prot=eq + scaffold09657 No
MT5G021260 mtr Ubiquitin carrier protein (AHRD V1 **** C6SVP6_SOYBN); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 transcript=eq;prot=eq;pid=Medtr5g021260.1; + 5 No
MT8G076490 mtr Ubiquitin carrier protein (AHRD V1 **** A6MUS6_GOSHI); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 transcript=eq;prot=eq;pid=Medtr8g076490.1; - 8 No
OS03G47770 osa ubiquitin%2Dconjugating enzyme E2 W, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_12G31930 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC033892; - Chr12 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier