Sub-family  

Parent family
HOM000001
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO001716 has 36 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G00100 aly name=fgenesh1_pg.C_scaffold_6000009;pid=349416;prot=eq;tid=349416 + scaffold_6 No
AT5G01930 ath Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Glycosyl hydrolase superfamily protein transcript=eq;prot=eq; - 5 No
BD4G44336 bdi pid=Bradi4g44336.1;tid=Bradi4g44336.1;GeneName=Bradi4g44336;transcript=eq;prot=eq + Bd4 No
CP00086G00720 cpa name=evm.TU.supercontig_86.72;pid=evm.TU.supercontig_86.72;prot=eq;transcript=eq - supercontig_86 No
CR01G10050 cre name=SKA_e_gwW.1.160.1;pid=205906;prot=eq;tid=205911;transcript=eq - chromosome_1 No
FV6G08330 fve Mannan endo-1,4-beta-mannosidase 6 (AtMAN6), Precursor (similar to) transcript=eq;prot=eq;pid=gene13566 + LG6 No
GM03G00440 gma 03 pid=16250650;transcript=eq;prot=eq;name=Glyma03g00440.1 + Gm03 No
GM09G41000 gma 09 pid=16277932;transcript=eq;prot=eq;name=Glyma09g41000.1 + Gm09 No
GM16G34630 gma 16 pid=16303868;transcript=eq;prot=eq;name=Glyma16g34630.1 - Gm16 No
GM18G44810 gma 18 pid=16310466;transcript=eq;prot=eq;name=Glyma18g44810.1 - Gm18 No
LJ3G004350 lja prot=eq;transcript=eq;scaffold=CM0634;name=chr3.CM0634.90.nc - chr3 No
MD00G048280 mdo transcript=eq;prot=eq;pid=MDP0000120098;tid=MDP0000120098;contig=MDC002016.263 + MDC002016.263 No
MD04G014210 mdo transcript=eq;prot=eq;pid=MDP0000321839;tid=MDP0000321839;contig=MDC018286.199 - 4 No
ME09360G00220 mes PACid=17961273;RNAname=cassava4.1_006893m;GeneName=cassava4.1_006893m.g;transcript=eq;prot=eq + scaffold09360 No
MRCC299_06G06890 mrcc299 name=e_gw2.06.277.1;pid=83090;prot=eq;tid=83090;transcript=eq - Chr_06 No
MT8G005270 mtr Mannan endo-1,4-beta-mannosidase 6 (AHRD V1 ***- Q9LZV3); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 transcript=eq;prot=eq;pid=Medtr8g005270.1; - 8 No
MT8G005670 mtr Mannan endo-1,4-beta-mannosidase 6 (AHRD V1 ***- Q9LZV3); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 transcript=eq;prot=eq;pid=Medtr8g005670.1; + 8 No
OL19G00120 olu NULL name=e_gwEuk.19.38.1,pid=42201,prot=eq,tid=42201 - Chr_19 No
OS05G25480 osa OsMan06 %2D Endo%2DBeta%2DMannanase, expressed transcript=eq;prot=eq; + 5 No
OS12G02520 osa OsMan09 %2D Endo%2DBeta%2DMannanase, expressed transcript=eq;prot=eq; - 12 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier