Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO001689 has 36 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G41720 aly name=scaffold_304417.1;pid=900447;prot=eq;tid=931960 - scaffold_3 No
AL7G28290 aly name=fgenesh2_kg.7__2776__AT4G15475.1;pid=493343;prot=eq;tid=493343 - scaffold_7 No
AT2G20790 ath clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968); Has 294 Blast hits to 294 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 151; Fungi - 30; Plants - 53; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).;clathrin adaptor complexes medium subunit family protein transcript=eq;prot=eq; - 2 No
AT4G15475 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; + 4 No
BD4G06100 bdi pid=Bradi4g06100.1;tid=Bradi4g06100.1;GeneName=Bradi4g06100;transcript=eq;prot=eq - Bd4 No
BD4G11900 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi4g11900.1;tid=Bradi4g11900.1;GeneName=Bradi4g11900;transcript=eq;prot=eq - Bd4 No
CP00016G00600 cpa name=evm.TU.supercontig_16.60;pid=evm.TU.supercontig_16.60;prot=eq;transcript=eq + supercontig_16 No
CP02494G00010 cpa name=evm.TU.supercontig_2494.1;pid=evm.TU.supercontig_2494.1;prot=eq;transcript=eq - supercontig_2494 No
FV4G16140 fve F-box/LRR-repeat protein 4 (AtFBL4) (putative) transcript=eq;prot=eq;pid=gene06143 + LG4 No
FV4G16210 fve MHD domain-containing death-inducing protein (MuD) (probable) transcript=eq;prot=eq;pid=gene06068 + LG4 No
GM17G02300 gma 17 pid=16304132;transcript=eq;prot=eq;name=Glyma17g02300.1 + Gm17 No
GM17G02310 gma 17 pid=16304133;transcript=eq;prot=eq;name=Glyma17g02310.1 + Gm17 No
LJ6G014600 lja partial;prot=eq;transcript=eq;scaffold=CM0539;name=chr6.CM0539.240.nd + chr6 No
LJ6G014690 lja partial;prot=eq;transcript=eq;scaffold=CM0539;name=chr6.CM0539.330.nd + chr6 No
MD13G017100 mdo transcript=eq;prot=eq;pid=MDP0000143860;tid=MDP0000143860;contig=MDC021083.97 - 13 No
MD16G013320 mdo transcript=eq;prot=eq;pid=MDP0000224875;tid=MDP0000224875;contig=MDC021309.343 - 16 No
ME05019G00330 mes PACid=17977469;RNAname=cassava4.1_003958m;GeneName=cassava4.1_003958m.g;transcript=eq;prot=eq + scaffold05019 No
ME05019G00340 mes PACid=17977451;RNAname=cassava4.1_003625m;GeneName=cassava4.1_003625m.g;transcript=eq;prot=eq + scaffold05019 No
MT2G021030 mtr F-box/LRR-repeat protein 4 (AHRD V1 ***- Q9C5D2); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype transcript=eq;prot=eq;pid=Medtr2g021030.1; - 2 No
OS11G42160 osa F%2Dbox%2FLRR%2Drepeat protein 3, putative, expressed transcript=eq;prot=eq; + 11 No
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