Sub-family  

Parent family
HOM000229
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family ORTHO001610 has 37 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G17730 aly name=fgenesh2_kg.7__1841__AT4G24390.1;pid=492408;prot=eq;tid=492408 + scaffold_7 No
AL8G13860 aly name=fgenesh2_kg.8__870__AT5G49980.1;pid=495054;prot=eq;tid=495054 - scaffold_8 No
AT4G24390 ath RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: auxin F-box protein 5 (TAIR:AT5G49980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; - 4 No
AT5G49980 ath auxin F-box protein 5 (AFB5); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G24390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;auxin F-box protein 5 transcript=eq;prot=eq; - 5 No
BD1G72070 bdi pid=Bradi1g72070.1;tid=Bradi1g72070.1;GeneName=Bradi1g72070;transcript=eq;prot=eq + Bd1 No
BD3G58320 bdi pid=Bradi3g58320.1;tid=Bradi3g58320.1;GeneName=Bradi3g58320;transcript=eq;prot=eq - Bd3 No
BD3G58327 bdi pid=Bradi3g58327.1;tid=Bradi3g58327.1;GeneName=Bradi3g58327;transcript=eq;prot=eq - Bd3 No
CP00827G00010 cpa name=evm.TU.supercontig_827.1;pid=evm.TU.supercontig_827.1;prot=eq;transcript=eq - supercontig_827 No
FV5G20590 fve Transport inhibitor response 1-like protein (TIR1-like protein) (putative) transcript=eq;prot=eq;pid=gene12066 - LG5 No
GM02G37470 gma 02 pid=16249358;transcript=eq;prot=eq;name=Glyma02g37470.1 - Gm02 No
GM04G09930 gma 04 pid=16255474;transcript=eq;prot=eq;name=Glyma04g09930.1 + Gm04 No
GM06G09990 gma 06 pid=16262378;transcript=eq;prot=eq;name=Glyma06g09990.1 + Gm06 No
GM14G35750 gma 14 pid=16296535;transcript=eq;prot=eq;name=Glyma14g35750.1 - Gm14 No
LJ1G002280 lja prot=eq;transcript=eq;scaffold=CM0145;name=chr1.CM0145.160.nc + chr1 No
MD00G014770 mdo transcript=eq;prot=eq;pid=MDP0000135966;tid=MDP0000135966;contig=MDC000627.196 + MDC000627.196 No
MD15G029930 mdo transcript=eq;prot=eq;pid=MDP0000809218;tid=MDP0000809218;contig=MDC008632.301 - 15 No
ME04059G00100 mes PACid=17992550;RNAname=cassava4.1_003408m;GeneName=cassava4.1_003408m.g;transcript=eq;prot=eq - scaffold04059 No
ME06916G02060 mes PACid=17981834;RNAname=cassava4.1_003543m;GeneName=cassava4.1_003543m.g;transcript=eq;prot=eq + scaffold06916 No
MT3G100860 mtr F-box family protein (AHRD V1 ***- B9H6Y0_POPTR) transcript=eq;prot=eq;pid=Medtr3g100860.1; + 3 No
MT5G065490 mtr F-box family protein (AHRD V1 ***- B9H6Y0_POPTR) transcript=eq;prot=eq;pid=Medtr5g065490.1; + 5 No
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