Sub-family  

Parent family
HOM002415
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO001607 has 37 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G14190 aly name=scaffold_701500.1;pid=913758;prot=eq;tid=945271 - scaffold_7 No
AL8G18200 aly name=fgenesh1_pm.C_scaffold_8001052;pid=331709;prot=eq;tid=331709 - scaffold_8 No
AT4G27690 ath vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 795 Blast hits to 794 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 146; Plants - 106; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).;vacuolar protein sorting 26B transcript=eq;prot=eq; + 4 No
AT5G53530 ath Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.;vacuolar protein sorting 26A transcript=eq;prot=eq; - 5 No
BD4G06910 bdi pid=Bradi4g06910.1;tid=Bradi4g06910.1;GeneName=Bradi4g06910;transcript=eq;prot=eq - Bd4 No
BD4G12930 bdi pid=Bradi4g12930.3;tid=Bradi4g12930.3;GeneName=Bradi4g12930;transcript=eq;prot=eq - Bd4 No
CP00003G01280 cpa name=evm.TU.supercontig_3.128;pid=evm.TU.supercontig_3.128;prot=eq;transcript=eq - supercontig_3 No
CR09G05860 cre name=acegs_kg.scaffold_30000042;pid=158645;prot=eq;tid=158645;transcript=eq - chromosome_9 No
FV7G35510 fve Vacuolar protein sorting-associated protein 26 (putative) transcript=eq;prot=eq;pid=gene12788 + LG7 No
GM04G15160 gma 04 pid=16255951;transcript=eq;prot=eq;name=Glyma04g15160.1 - Gm04 No
GM06G46990 gma 06 pid=16265436;transcript=eq;prot=eq;name=Glyma06g46990.1 + Gm06 No
GM13G03920 gma 13 pid=16289574;transcript=eq;prot=eq;name=Glyma13g03920.1 + Gm13 No
ME07330G00140 mes PACid=17990014;RNAname=cassava4.1_015603m;GeneName=cassava4.1_015603m.g;transcript=eq;prot=eq + scaffold07330 No
MRCC299_09G05650 mrcc299 name=estExt_Genewise2.C_Chr_090620;pid=91691;prot=eq;tid=91691;transcript=eq - Chr_09 No
OL04G00630 olu NULL name=e_gwEuk.4.375.1,pid=37043,prot=eq,tid=37043 - Chr_4 No
OS11G41130 osa vacuolar protein sorting%2Dassociated protein 26, putative, expressed transcript=eq;prot=eq; + 11 No
OS12G31640 osa vacuolar protein sorting%2Dassociated protein 26, putative, expressed transcript=eq;prot=eq; + 12 No
OSINDICA_11G29710 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC035793; + Chr11 No
OSINDICA_12G21140 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC033129; + Chr12 No
OT04G00740 ota name=OT04G00740;protein_id=CAL51472.1;prot=eq - chrom04 No
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