Sub-family  

Parent family
HOM000220
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO001537 has 37 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G04910 aly name=fgenesh2_kg.2__355__AT1G61010.3;pid=475225;prot=eq;tid=475225 + scaffold_2 No
AT1G61010 ath cleavage and polyadenylation specificity factor 73-I (CPSF73-I); CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term (InterPro:IPR021718); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 5076 Blast hits to 5016 proteins in 1410 species: Archae - 467; Bacteria - 2637; Metazoa - 590; Fungi - 276; Plants - 187; Viruses - 2; Other Eukaryotes - 917 (source: NCBI BLink).;cleavage and polyadenylation specificity factor 73-I transcript=eq;prot=eq; - 1 No
BD1G01140 bdi endoribonuclease activity (Blast2GO) pid=Bradi1g01140.1;tid=Bradi1g01140.1;GeneName=Bradi1g01140;transcript=eq;prot=eq + Bd1 No
BD1G01200 bdi endoribonuclease activity (Blast2GO) pid=Bradi1g01200.1;tid=Bradi1g01200.1;GeneName=Bradi1g01200;transcript=eq;prot=eq - Bd1 No
CR12G02980 cre name=OVA_e_gwW.78.1.1;pid=206443;prot=eq;tid=206448;transcript=eq + chromosome_12 No
FV0G32990 fve Cleavage and polyadenylation specificity factor subunit 3 (CPSF 73 kDa subunit) (probable) transcript=eq;prot=eq;pid=gene11025 - scf0513146 No
FV4G05120 fve Cleavage and polyadenylation specificity factor subunit 3 (CPSF 73 kDa subunit) (putative) transcript=eq;prot=eq;pid=gene17143 + LG4 No
GM08G20140 gma 08 pid=16271816;transcript=eq;prot=eq;name=Glyma08g20140.1 + Gm08 No
GM12G29040 gma 12 pid=16288250;transcript=eq;prot=eq;name=Glyma12g29040.1 - Gm12 No
LJ6G020060 lja prot=eq;transcript=eq;scaffold=CM0885;name=chr6.CM0885.90.nc + chr6 No
MD00G075800 mdo transcript=eq;prot=eq;pid=MDP0000757257;tid=MDP0000757257;contig=MDC003151.367 + MDC003151.367 No
MD00G139730 mdo transcript=eq;prot=eq;pid=MDP0000248753;tid=MDP0000248753;contig=MDC005962.303 - MDC005962.303 No
MD08G022170 mdo transcript=eq;prot=eq;pid=MDP0000297162;tid=MDP0000297162;contig=MDC011723.399 + 8 No
MD15G037040 mdo transcript=eq;prot=eq;pid=MDP0000293960;tid=MDP0000293960;contig=MDC012741.380 + 15 No
ME02817G00250 mes PACid=17983746;RNAname=cassava4.1_002801m;GeneName=cassava4.1_002801m.g;transcript=eq;prot=eq + scaffold02817 No
MRCC299_10G03450 mrcc299 name=e_gw2.10.65.1;pid=85708;prot=eq;tid=85708;transcript=eq - Chr_10 No
MT2G006180 mtr Cleavage and polyadenylation specificity factor subunit 3-I (AHRD V1 ***- Q9C952); contains Interpro domain(s) IPR011108 RNA-metabolising metallo-beta-lactamase transcript=eq;prot=eq;pid=Medtr2g006180.1; - 2 No
MT2G006620 mtr Cleavage and polyadenylation specificity factor subunit 3-I (AHRD V1 ***- Q9C952); contains Interpro domain(s) IPR011108 RNA-metabolising metallo-beta-lactamase transcript=eq;prot=eq;pid=Medtr2g006620.1; - 2 No
OL09G02080 olu NULL name=eugene.0900010208,pid=33504,prot=eq,tid=33504 - Chr_9 No
OS03G63590 osa metallo%2Dbeta%2Dlactamase, putative, expressed transcript=eq;prot=eq; - 3 No
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