Sub-family 
- Id
- ORTHO001531
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM001271
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (4 genes)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (2 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO001531 has 37 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO001531
Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G37880 | aly | name=fgenesh1_pm.C_scaffold_1002832;pid=314052;prot=eq;tid=314052 | - | scaffold_1 | No | |
| AL6G27780 | aly | name=fgenesh2_kg.6__2713__AT5G27470.1;pid=489579;prot=eq;tid=489579 | - | scaffold_6 | No | |
| AL6G27790 | aly | name=scaffold_602894.1;pid=910837;prot=eq;tid=942350 | - | scaffold_6 | No | |
| AL8G07140 | aly | name=fgenesh1_pm.C_scaffold_8000421;pid=331078;prot=eq;tid=331078 | + | scaffold_8 | No | |
| AT5G27470 | ath | seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase (TAIR:AT1G11870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;seryl-tRNA synthetase / serine--tRNA ligase | transcript=eq;prot=eq; | + | 5 | No |
| BD1G71300 | bdi | serine-tRNA ligase activity, ATP binding (Blast2GO) | pid=Bradi1g71300.1;tid=Bradi1g71300.1;GeneName=Bradi1g71300;transcript=eq;prot=eq | - | Bd1 | No |
| BD2G08900 | bdi | serine-tRNA ligase activity, ATP binding (Blast2GO) | pid=Bradi2g08900.1;tid=Bradi2g08900.1;GeneName=Bradi2g08900;transcript=eq;prot=eq | + | Bd2 | No |
| CP00026G01760 | cpa | name=evm.TU.supercontig_26.176;pid=evm.TU.supercontig_26.176;prot=eq;transcript=eq | - | supercontig_26 | No | |
| CR03G08500 | cre | name=OVA_chlre3.14.21.1.1;pid=206186;prot=eq;tid=206191;transcript=eq | - | chromosome_3 | No | |
| FV6G05890 | fve | Seryl-tRNA synthetase (SerRS) (putative) | transcript=eq;prot=eq;pid=gene22561 | - | LG6 | No |
| GM10G29600 | gma | 10 | pid=16280366;transcript=eq;prot=eq;name=Glyma10g29600.1 | - | Gm10 | No |
| GM20G37700 | gma | 20 | pid=16318204;transcript=eq;prot=eq;name=Glyma20g37700.1 | + | Gm20 | No |
| LJ0G300260 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_103732;name=LjSGA_103732.1 | + | LjSGA_103732 | No | |
| MD00G363510 | mdo | transcript=eq;prot=eq;pid=MDP0000215154;tid=MDP0000215154;contig=MDC016343.187 | + | MDC016343.187 | No | |
| MD04G016910 | mdo | transcript=eq;prot=eq;pid=MDP0000299519;tid=MDP0000299519;contig=MDC012941.223 | - | 4 | No | |
| MD12G022380 | mdo | transcript=eq;prot=eq;pid=MDP0000120290;tid=MDP0000120290;contig=MDC002369.86 | - | 12 | No | |
| ME07229G00030 | mes | PACid=17976581;RNAname=cassava4.1_014135m;GeneName=cassava4.1_014135m.g;transcript=eq;prot=eq | - | scaffold07229 | No | |
| ME09809G00140 | mes | PACid=17986599;RNAname=cassava4.1_014328m;GeneName=cassava4.1_014328m.g;transcript=eq;prot=eq | + | scaffold09809 | No | |
| MRCC299_04G04050 | mrcc299 | name=e_gw2.04.227.1;pid=80937;prot=eq;tid=80937;transcript=eq | + | Chr_04 | No | |
| MT1G082850 | mtr | Seryl-tRNA synthetase (AHRD V1 **** Q39230); contains Interpro domain(s) IPR002317 Seryl-tRNA synthetase, class IIa | transcript=eq;prot=eq;pid=Medtr1g082850.1; | + | 1 | No |