Sub-family  

Parent family
HOM001271
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO001531 has 37 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G37880 aly name=fgenesh1_pm.C_scaffold_1002832;pid=314052;prot=eq;tid=314052 - scaffold_1 No
AL6G27780 aly name=fgenesh2_kg.6__2713__AT5G27470.1;pid=489579;prot=eq;tid=489579 - scaffold_6 No
AL6G27790 aly name=scaffold_602894.1;pid=910837;prot=eq;tid=942350 - scaffold_6 No
AL8G07140 aly name=fgenesh1_pm.C_scaffold_8000421;pid=331078;prot=eq;tid=331078 + scaffold_8 No
AT5G27470 ath seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase (TAIR:AT1G11870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;seryl-tRNA synthetase / serine--tRNA ligase transcript=eq;prot=eq; + 5 No
BD1G71300 bdi serine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi1g71300.1;tid=Bradi1g71300.1;GeneName=Bradi1g71300;transcript=eq;prot=eq - Bd1 No
BD2G08900 bdi serine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi2g08900.1;tid=Bradi2g08900.1;GeneName=Bradi2g08900;transcript=eq;prot=eq + Bd2 No
CP00026G01760 cpa name=evm.TU.supercontig_26.176;pid=evm.TU.supercontig_26.176;prot=eq;transcript=eq - supercontig_26 No
CR03G08500 cre name=OVA_chlre3.14.21.1.1;pid=206186;prot=eq;tid=206191;transcript=eq - chromosome_3 No
FV6G05890 fve Seryl-tRNA synthetase (SerRS) (putative) transcript=eq;prot=eq;pid=gene22561 - LG6 No
GM10G29600 gma 10 pid=16280366;transcript=eq;prot=eq;name=Glyma10g29600.1 - Gm10 No
GM20G37700 gma 20 pid=16318204;transcript=eq;prot=eq;name=Glyma20g37700.1 + Gm20 No
LJ0G300260 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_103732;name=LjSGA_103732.1 + LjSGA_103732 No
MD00G363510 mdo transcript=eq;prot=eq;pid=MDP0000215154;tid=MDP0000215154;contig=MDC016343.187 + MDC016343.187 No
MD04G016910 mdo transcript=eq;prot=eq;pid=MDP0000299519;tid=MDP0000299519;contig=MDC012941.223 - 4 No
MD12G022380 mdo transcript=eq;prot=eq;pid=MDP0000120290;tid=MDP0000120290;contig=MDC002369.86 - 12 No
ME07229G00030 mes PACid=17976581;RNAname=cassava4.1_014135m;GeneName=cassava4.1_014135m.g;transcript=eq;prot=eq - scaffold07229 No
ME09809G00140 mes PACid=17986599;RNAname=cassava4.1_014328m;GeneName=cassava4.1_014328m.g;transcript=eq;prot=eq + scaffold09809 No
MRCC299_04G04050 mrcc299 name=e_gw2.04.227.1;pid=80937;prot=eq;tid=80937;transcript=eq + Chr_04 No
MT1G082850 mtr Seryl-tRNA synthetase (AHRD V1 **** Q39230); contains Interpro domain(s) IPR002317 Seryl-tRNA synthetase, class IIa transcript=eq;prot=eq;pid=Medtr1g082850.1; + 1 No
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