Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO001518 has 37 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05330 aly name=scaffold_100568.1;pid=887774;prot=eq;tid=919287 + scaffold_1 No
AL3G07810 aly name=scaffold_300874.1;pid=896904;prot=eq;tid=928417 - scaffold_3 No
AL4G16580 aly name=scaffold_401702.1;pid=902201;prot=eq;tid=933714 - scaffold_4 No
AL4G30550 aly name=scaffold_403195.1;pid=903694;prot=eq;tid=935207 - scaffold_4 No
AT1G05810 ath RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink).;RAB GTPase homolog A5E transcript=eq;prot=eq; + 1 No
AT2G31680 ath RAB GTPase homolog A5D (RABA5d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5E (TAIR:AT1G05810.1); Has 27628 Blast hits to 27593 proteins in 754 species: Archae - 22; Bacteria - 125; Metazoa - 14573; Fungi - 3749; Plants - 3264; Viruses - 20; Other Eukaryotes - 5875 (source: NCBI BLink).;RAB GTPase homolog A5D transcript=eq;prot=eq; - 2 No
AT2G43130 ath encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic.;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 2 No
AT3G07410 ath RAB GTPase homolog A5B (RABA5b); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G43130.1); Has 27936 Blast hits to 27886 proteins in 749 species: Archae - 21; Bacteria - 143; Metazoa - 14734; Fungi - 3835; Plants - 3288; Viruses - 20; Other Eukaryotes - 5895 (source: NCBI BLink).;RAB GTPase homolog A5B transcript=eq;prot=eq; - 3 No
BD3G40850 bdi GTPase activity (Blast2GO) pid=Bradi3g40850.1;tid=Bradi3g40850.1;GeneName=Bradi3g40850;transcript=eq;prot=eq + Bd3 No
CP00090G00500 cpa name=evm.TU.supercontig_90.50;pid=evm.TU.supercontig_90.50;prot=eq;transcript=eq + supercontig_90 No
FV2G13600 fve Ras-related protein ARA-4 (similar to) transcript=eq;prot=eq;pid=gene17470 + LG2 No
FV4G09330 fve Ras-related protein ARA-1 (putative) transcript=eq;prot=eq;pid=gene22489 - LG4 No
GM08G45920 gma 08 pid=16273974;transcript=eq;prot=eq;name=Glyma08g45920.1 + Gm08 No
GM08G47610 gma 08 pid=16274178;transcript=eq;prot=eq;name=Glyma08g47610.1 + Gm08 No
GM18G53870 gma 18 pid=16311376;transcript=eq;prot=eq;name=Glyma18g53870.1 - Gm18 No
LJ1G037830 lja prot=eq;transcript=eq;scaffold=CM0800;name=chr1.CM0800.90.nd + chr1 No
MD09G015960 mdo transcript=eq;prot=eq;pid=MDP0000244605;tid=MDP0000244605;contig=MDC019404.134 - 9 No
MD10G011280 mdo transcript=eq;prot=eq;pid=MDP0000150710;tid=MDP0000150710;contig=MDC013213.252 + 10 No
ME00749G00020 mes PACid=17961184;RNAname=cassava4.1_015840m;GeneName=cassava4.1_015840m.g;transcript=eq;prot=eq - scaffold00749 No
ME06158G00310 mes PACid=17986998;RNAname=cassava4.1_014045m;GeneName=cassava4.1_014045m.g;transcript=eq;prot=eq + scaffold06158 No
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