Sub-family  

Parent family
HOM000243
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO001496 has 38 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 38 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G20160 aly name=fgenesh1_pm.C_scaffold_7001632;pid=329405;prot=eq;tid=329405 + scaffold_7 No
AT4G22140 ath EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 1958 Blast hits to 1898 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1059; Fungi - 271; Plants - 475; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).;PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein transcript=eq;prot=eq; - 4 No
BD3G36110 bdi DNA-dependent ATPase activity (Blast2GO) pid=Bradi3g36110.1;tid=Bradi3g36110.1;GeneName=Bradi3g36110;transcript=eq;prot=eq + Bd3 No
BD4G29560 bdi DNA-dependent ATPase activity, histone lysine N-methyltransferase activity (H3-K4 specific) (Blast2GO) pid=Bradi4g29560.1;tid=Bradi4g29560.1;GeneName=Bradi4g29560;transcript=eq;prot=eq + Bd4 No
CP00132G00080 cpa name=evm.TU.supercontig_132.8;pid=evm.TU.supercontig_132.8;prot=eq;transcript=eq - supercontig_132 No
CP00152G00530 cpa name=evm.TU.supercontig_152.53;pid=evm.TU.supercontig_152.53;prot=eq;transcript=eq - supercontig_152 No
FV3G01650 fve BAH and coiled-coil domain-containing protein 1 (BAH domain-containing protein 2) (probable) transcript=eq;prot=eq;pid=gene19505 - LG3 No
GM12G20180 gma 12 pid=16287847;transcript=eq;prot=eq;name=Glyma12g20180.1 - Gm12 No
GM12G35680 gma 12 pid=16289004;transcript=eq;prot=eq;name=Glyma12g35680.1 + Gm12 No
GM13G34740 gma 13 pid=16292629;transcript=eq;prot=eq;name=Glyma13g34740.1 - Gm13 No
LJ3G003700 lja prot=eq;transcript=eq;scaffold=CM0282;name=chr3.CM0282.570.nc - chr3 No
ME05214G00290 mes PACid=17993813;RNAname=cassava4.1_015965m;GeneName=cassava4.1_015965m.g;transcript=eq;prot=eq - scaffold05214 No
ME07510G00120 mes PACid=17967118;RNAname=cassava4.1_015656m;GeneName=cassava4.1_015656m.g;transcript=eq;prot=eq - scaffold07510 No
MRCC299_01G00120 mrcc299 name=e_gw2.01.792.1;pid=77910;prot=eq;tid=77910;transcript=eq + Chr_01 No
OL03G05490 olu NULL name=e_gwEuk.3.586.1,pid=34069,prot=eq,tid=34069 + Chr_3 No
OS09G21770 osa ES43 protein, putative, expressed transcript=eq;prot=eq; + 9 No
OSINDICA_08G30780 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC026775; + Chr08 No
OSINDICA_09G16690 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC028602; + Chr09 No
OT03G05490 ota OSJNBa0048A13.16 gene product (ISS); name=OT03G05490;protein_id=CAL53200.1;prot=eq + chrom03 No
PP00056G01030 ppa NULL name=gw1.56.180.1,pid=47783,prot=eq,tid=47783 - scaffold_56 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier