Sub-family 
- Id
- ORTHO001431
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000846
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (5 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (3 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (2 genes)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (2 genes)
The gene family ORTHO001431 has 38 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO001431
Page 1 of 2, showing 20 records out of 38 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G50300 | aly | name=scaffold_105361.1;pid=892567;prot=eq;tid=924080 | - | scaffold_1 | No | |
| AL3G13860 | aly | name=scaffold_301529.1;pid=897559;prot=eq;tid=929072 | + | scaffold_3 | No | |
| AL8G21640 | aly | name=Al_scaffold_0008_2062;pid=885798;prot=eq;tid=917311 | + | scaffold_8 | No | |
| AT1G55680 | ath | Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 20114 Blast hits to 9589 proteins in 506 species: Archae - 80; Bacteria - 6727; Metazoa - 4776; Fungi - 4188; Plants - 1687; Viruses - 0; Other Eukaryotes - 2656 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein | transcript=eq;prot=eq; | - | 1 | No |
| AT3G13340 | ath | Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G55680.1); Has 21298 Blast hits to 10067 proteins in 523 species: Archae - 80; Bacteria - 6953; Metazoa - 5235; Fungi - 4425; Plants - 1789; Viruses - 0; Other Eukaryotes - 2816 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein | transcript=eq;prot=eq; | + | 3 | No |
| AT5G56190 | ath | Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein | transcript=eq;prot=eq; | + | 5 | No |
| BD1G42960 | bdi | ATPase activity, coupled (Blast2GO) | pid=Bradi1g42960.1;tid=Bradi1g42960.1;GeneName=Bradi1g42960;transcript=eq;prot=eq | - | Bd1 | No |
| BD3G56640 | bdi | ATPase activity, coupled (Blast2GO) | pid=Bradi3g56640.1;tid=Bradi3g56640.1;GeneName=Bradi3g56640;transcript=eq;prot=eq | + | Bd3 | No |
| CP00012G00730 | cpa | name=evm.TU.supercontig_12.73;pid=evm.TU.supercontig_12.73;prot=eq;transcript=eq | - | supercontig_12 | No | |
| FV3G34650 | fve | hypothetical protein | transcript=eq;prot=eq;pid=gene01440 | - | LG3 | No |
| GM04G12500 | gma | 04 | pid=16255746;transcript=eq;prot=eq;name=Glyma04g12500.1 | + | Gm04 | No |
| GM07G40060 | gma | 07 | pid=16269349;transcript=eq;prot=eq;name=Glyma07g40060.1 | + | Gm07 | No |
| GM09G02070 | gma | 09 | pid=16274492;transcript=eq;prot=eq;name=Glyma09g02070.1 | + | Gm09 | No |
| GM15G12980 | gma | 15 | pid=16298606;transcript=eq;prot=eq;name=Glyma15g12980.1 | + | Gm15 | No |
| GM17G00740 | gma | 17 | pid=16303949;transcript=eq;prot=eq;name=Glyma17g00740.1 | - | Gm17 | No |
| LJ3G019060 | lja | prot=eq;transcript=eq;scaffold=CM0047;name=chr3.CM0047.460.nc | + | chr3 | No | |
| MD00G072840 | mdo | transcript=eq;prot=eq;pid=MDP0000146174;tid=MDP0000146174;contig=MDC003021.376 | + | MDC003021.376 | No | |
| MD00G129010 | mdo | transcript=eq;prot=eq;pid=MDP0000257364;tid=MDP0000257364;contig=MDC005487.407 | + | MDC005487.407 | No | |
| MD00G241080 | mdo | transcript=eq;prot=eq;pid=MDP0000819240;tid=MDP0000819240;contig=MDC010441.399 | - | MDC010441.399 | No | |
| MD03G003190 | mdo | transcript=eq;prot=eq;pid=MDP0000770904;tid=MDP0000770904;contig=MDC010441.402 | + | 3 | No |