Sub-family 
- Id
- ORTHO001409
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM002471
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- gma
- Glycine max (3 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (3 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO001409 has 38 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO001409
Page 1 of 2, showing 20 records out of 38 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G17100 | aly | name=fgenesh2_kg.1__1775__AT1G16240.3;pid=471821;prot=eq;tid=471821 | - | scaffold_1 | No | |
| AL2G28640 | aly | name=fgenesh2_kg.2__2261__AT1G79590.2;pid=477131;prot=eq;tid=477131 | + | scaffold_2 | No | |
| AT1G16240 | ath | Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.;syntaxin of plants 51 | transcript=eq;prot=eq; | - | 1 | No |
| AT1G79590 | ath | Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.;syntaxin of plants 52 | transcript=eq;prot=eq; | + | 1 | No |
| BD3G01760 | bdi | phosphatidylinositol 3-phosphate binding (Blast2GO) | pid=Bradi3g01760.1;tid=Bradi3g01760.1;GeneName=Bradi3g01760;transcript=eq;prot=eq | - | Bd3 | No |
| BD3G19690 | bdi | phosphatidylinositol 3-phosphate binding (Blast2GO) | pid=Bradi3g19690.3;tid=Bradi3g19690.3;GeneName=Bradi3g19690;transcript=eq;prot=eq | - | Bd3 | No |
| CP00012G02470 | cpa | name=evm.TU.supercontig_12.247;pid=evm.TU.supercontig_12.247;prot=eq;transcript=eq | - | supercontig_12 | No | |
| CR17G02800 | cre | name=estExt_fgenesh2_pg.C_130061;pid=189016;prot=eq;tid=189016;transcript=eq | - | chromosome_17 | No | |
| GM08G43480 | gma | 08 | pid=16273704;transcript=eq;prot=eq;name=Glyma08g43480.1 | + | Gm08 | No |
| GM14G02120 | gma | 14 | pid=16294050;transcript=eq;prot=eq;name=Glyma14g02120.1 | - | Gm14 | No |
| GM18G10060 | gma | 18 | pid=16308451;transcript=eq;prot=eq;name=Glyma18g10060.1 | - | Gm18 | No |
| LJ2G038230 | lja | prot=eq;transcript=eq;scaffold=LjT03I05;name=chr2.LjT03I05.10.nc | + | chr2 | No | |
| MD00G003200 | mdo | transcript=eq;prot=eq;pid=MDP0000001088;tid=MDP0000001088;contig=MDC000137.316 | - | MDC000137.316 | No | |
| MD00G036590 | mdo | transcript=eq;prot=eq;pid=MDP0000546160;tid=MDP0000546160;contig=MDC001552.74 | - | MDC001552.74 | No | |
| MD00G111790 | mdo | transcript=eq;prot=eq;pid=MDP0000588783;tid=MDP0000588783;contig=MDC004759.111 | + | MDC004759.111 | No | |
| MD00G474200 | mdo | transcript=eq;prot=eq;pid=MDP0000143333;tid=MDP0000143333;contig=MDC022038.268 | - | MDC022038.268 | No | |
| MD11G017260 | mdo | transcript=eq;prot=eq;pid=MDP0000363658;tid=MDP0000363658;contig=MDC004759.122 | - | 11 | No | |
| ME03332G00200 | mes | PACid=17967501;RNAname=cassava4.1_015282m;GeneName=cassava4.1_015286m.g;transcript=eq;prot=eq | - | scaffold03332 | No | |
| MRCC299_09G04650 | mrcc299 | name=EuGene.0900010457;pid=61474;prot=eq;tid=61474;transcript=eq | - | Chr_09 | No | |
| MT3G055200 | mtr | Syntaxin-52 (AHRD V1 ***- Q94KK7); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region | transcript=eq;prot=eq;pid=Medtr3g055200.1; | + | 3 | No |