Sub-family  

Parent family
HOM000363
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO001368 has 39 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G33850 aly name=fgenesh1_pg.C_scaffold_4002740;pid=346398;prot=eq;tid=346398 - scaffold_4 No
AL6G41140 aly name=fgenesh2_kg.6__3651__AT4G00490.1;pid=490517;prot=eq;tid=490517 - scaffold_6 No
AT2G45880 ath beta-amylase 7 (BAM7); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 2 (TAIR:AT4G00490.1); Has 965 Blast hits to 963 proteins in 157 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 3; Plants - 810; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).;beta-amylase 7 transcript=eq;prot=eq; - 2 No
AT4G00490 ath Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.;beta-amylase 2 transcript=eq;prot=eq; + 4 No
BD2G00824 bdi pid=Bradi2g00824.1;tid=Bradi2g00824.1;GeneName=Bradi2g00824;transcript=eq;prot=eq + Bd2 No
BD4G38630 bdi Glycosyl hydrolase (GH), subfamily GH14 pid=Bradi4g38630.1;tid=Bradi4g38630.1;GeneName=Bradi4g38630;Name=BdGH14_11;transcript=eq;prot=eq + Bd4 No
CP00018G02460 cpa name=evm.TU.supercontig_18.246;pid=evm.TU.supercontig_18.246;prot=eq;transcript=eq - supercontig_18 No
CP00018G02470 cpa name=evm.TU.supercontig_18.247;pid=evm.TU.supercontig_18.247;prot=eq;transcript=eq - supercontig_18 No
FV7G08130 fve Beta-amylase (similar to) transcript=eq;prot=eq;pid=gene19322 + LG7 No
FV7G08150 fve Beta-amylase (probable) transcript=eq;prot=eq;pid=gene19324 + LG7 No
GM09G39610 gma 09 pid=16277770;transcript=eq;prot=eq;name=Glyma09g39610.1 + Gm09 No
GM18G46630 gma 18 pid=16310648;transcript=eq;prot=eq;name=Glyma18g46630.1 - Gm18 No
LJ0G458090 lja prot=eq;transcript=eq;scaffold=LjT34L14;name=LjT34L14.60.nc - chr0 No
MD00G125220 mdo transcript=eq;prot=eq;pid=MDP0000276235;tid=MDP0000276235;contig=MDC005316.201 - MDC005316.201 No
MD00G227910 mdo transcript=eq;prot=eq;pid=MDP0000193840;tid=MDP0000193840;contig=MDC009875.265 + MDC009875.265 No
MD00G352430 mdo transcript=eq;prot=eq;pid=MDP0000152511;tid=MDP0000152511;contig=MDC015796.321 - MDC015796.321 No
MD00G352500 mdo transcript=eq;prot=eq;pid=MDP0000232760;tid=MDP0000232760;contig=MDC015796.384 - MDC015796.384 No
MD00G405050 mdo transcript=eq;prot=eq;pid=MDP0000206646;tid=MDP0000206646;contig=MDC018407.209 - MDC018407.209 No
MD00G486530 mdo transcript=eq;prot=eq;pid=MDP0000144491;tid=MDP0000144491;contig=MDC022794.472 - MDC022794.472 No
MD15G029540 mdo transcript=eq;prot=eq;pid=MDP0000397284;tid=MDP0000397284;contig=MDC006374.847 + 15 No
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