Sub-family 
- Id
- ORTHO001350
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (8 genes)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (2 genes)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (3 genes)
The gene family ORTHO001350 has 39 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO001350
Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G12000 | aly | name=fgenesh2_kg.3__1207__AT3G11600.1;pid=478506;prot=eq;tid=478506 | + | scaffold_3 | No | |
| AL6G05890 | aly | name=fgenesh2_kg.6__569__AT5G06270.1;pid=487435;prot=eq;tid=487435 | + | scaffold_6 | No | |
| AT3G11600 | ath | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | transcript=eq;prot=eq; | + | 3 | No |
| AT5G06270 | ath | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | transcript=eq;prot=eq; | + | 5 | No |
| BD2G23990 | bdi | pid=Bradi2g23990.1;tid=Bradi2g23990.1;GeneName=Bradi2g23990;transcript=eq;prot=eq | + | Bd2 | No | |
| BD3G45060 | bdi | pid=Bradi3g45060.1;tid=Bradi3g45060.1;GeneName=Bradi3g45060;transcript=eq;prot=eq | + | Bd3 | No | |
| BD5G09550 | bdi | pid=Bradi5g09550.1;tid=Bradi5g09550.1;GeneName=Bradi5g09550;transcript=eq;prot=eq | + | Bd5 | No | |
| CP00195G00330 | cpa | name=evm.TU.supercontig_195.33;pid=evm.TU.supercontig_195.33;prot=eq;transcript=eq | + | supercontig_195 | No | |
| FV0G14320 | fve | Putative ribonuclease H protein At1g65750 (probable) | transcript=eq;prot=eq;pid=gene07327 | + | scf0513160 | No |
| FV0G42430 | fve | hypothetical protein | transcript=eq;prot=eq;pid=gene05225 | + | scf0513155 | No |
| FV0G52160 | fve | Aspartate--ammonia ligase (probable) | transcript=eq;prot=eq;pid=gene02792 | + | scf0512900 | No |
| FV2G20520 | fve | Putative ribonuclease H protein At1g65750 (probable) | transcript=eq;prot=eq;pid=gene27533 | - | LG2 | No |
| FV2G47370 | fve | hypothetical protein | transcript=eq;prot=eq;pid=gene16146 | - | LG2 | No |
| FV3G17670 | fve | hypothetical protein | transcript=eq;prot=eq;pid=gene27187 | - | LG3 | No |
| FV4G19090 | fve | Putative ribonuclease H protein At1g65750 (probable) | transcript=eq;prot=eq;pid=gene22972 | - | LG4 | No |
| FV6G31150 | fve | Putative ribonuclease H protein At1g65750 (probable) | transcript=eq;prot=eq;pid=gene15328 | - | LG6 | No |
| GM03G35780 | gma | 03 | pid=16253459;transcript=eq;prot=eq;name=Glyma03g35780.1 | + | Gm03 | No |
| GM19G38440 | gma | 19 | pid=16314201;transcript=eq;prot=eq;name=Glyma19g38440.1 | + | Gm19 | No |
| LJ0G436860 | lja | prot=eq;transcript=eq;scaffold=LjT18K22;name=LjT18K22.130.nc | - | chr0 | No | |
| MD00G436550 | mdo | transcript=eq;prot=eq;pid=MDP0000617684;tid=MDP0000617684;contig=MDC019984.326 | + | MDC019984.326 | No |