Sub-family  

Parent family
HOM002501
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO001321 has 39 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G16320 aly name=fgenesh2_kg.1__1702__AT1G15470.1;pid=471748;prot=eq;tid=471748 + scaffold_1 No
AL1G47760 aly name=fgenesh2_kg.1__4352__AT1G52730.2;pid=474398;prot=eq;tid=474398 + scaffold_1 No
AL3G16590 aly name=fgenesh2_kg.3__1713__AT3G15610.1;pid=479012;prot=eq;tid=479012 - scaffold_3 No
AT1G15470 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 1 No
AT1G52730 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41491 Blast hits to 21864 proteins in 790 species: Archae - 74; Bacteria - 7325; Metazoa - 14827; Fungi - 9797; Plants - 4470; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 1 No
AT3G15610 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G52730.1); Has 43706 Blast hits to 23089 proteins in 800 species: Archae - 76; Bacteria - 7357; Metazoa - 15603; Fungi - 10314; Plants - 4879; Viruses - 0; Other Eukaryotes - 5477 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 3 No
BD1G36840 bdi microtubule-severing ATPase activity (Blast2GO) pid=Bradi1g36840.1;tid=Bradi1g36840.1;GeneName=Bradi1g36840;transcript=eq;prot=eq + Bd1 No
CP00010G01950 cpa name=evm.TU.supercontig_10.195;pid=evm.TU.supercontig_10.195;prot=eq;transcript=eq - supercontig_10 No
CR06G11290 cre name=estExt_fgenesh1_pm.C_chromosome_60603;pid=378635;prot=eq;tid=378642;transcript=eq - chromosome_6 No
FV1G06310 fve Serine-threonine kinase receptor-associated protein (similar to) transcript=eq;prot=eq;pid=gene30966 + LG1 No
GM05G08200 gma 05 pid=16258645;transcript=eq;prot=eq;name=Glyma05g08200.1 - Gm05 No
GM17G12770 gma 17 pid=16305371;transcript=eq;prot=eq;name=Glyma17g12770.1 + Gm17 No
LJ0G429110 lja prot=eq;transcript=eq;scaffold=LjT33M20;name=LjT33M20.230.nd - chr0 No
MD00G052560 mdo transcript=eq;prot=eq;pid=MDP0000266224;tid=MDP0000266224;contig=MDC002171.556 - MDC002171.556 No
MD00G142500 mdo transcript=eq;prot=eq;pid=MDP0000280567;tid=MDP0000280567;contig=MDC006110.110 + MDC006110.110 No
MD02G003540 mdo transcript=eq;prot=eq;pid=MDP0000266916;tid=MDP0000266916;contig=MDC002171.584 + 2 No
MD15G011540 mdo transcript=eq;prot=eq;pid=MDP0000323946;tid=MDP0000323946;contig=MDC015237.44 + 15 No
ME02853G00070 mes PACid=17959761;RNAname=cassava4.1_010824m;GeneName=cassava4.1_010824m.g;transcript=eq;prot=eq + scaffold02853 No
ME04151G00800 mes PACid=17962991;RNAname=cassava4.1_010847m;GeneName=cassava4.1_010847m.g;transcript=eq;prot=eq + scaffold04151 No
ME08059G00030 mes PACid=17979609;RNAname=cassava4.1_010815m;GeneName=cassava4.1_010815m.g;transcript=eq;prot=eq - scaffold08059 No
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