Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO001249 has 40 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G15280 aly name=fgenesh2_kg.3__1560__AT3G14400.1;pid=478859;prot=eq;tid=478859 - scaffold_3 No
AL3G15290 aly name=scaffold_301684.1;pid=897714;prot=eq;tid=929227 - scaffold_3 No
AT3G14400 ath Encodes a ubiquitin-specific protease.;ubiquitin-specific protease 25 transcript=eq;prot=eq; - 3 No
AT3G14410 ath Nucleotide/sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G53660.1); Has 2316 Blast hits to 2309 proteins in 275 species: Archae - 4; Bacteria - 65; Metazoa - 512; Fungi - 392; Plants - 1095; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).;Nucleotide/sugar transporter family protein transcript=eq;prot=eq; - 3 No
BD2G20280 bdi ubiquitin-specific protease activity (Blast2GO) pid=Bradi2g20280.1;tid=Bradi2g20280.1;GeneName=Bradi2g20280;transcript=eq;prot=eq - Bd2 No
BD3G14406 bdi pid=Bradi3g14406.2;tid=Bradi3g14406.2;GeneName=Bradi3g14406;transcript=eq;prot=eq - Bd3 No
CP00077G01060 cpa name=evm.TU.supercontig_77.106;pid=evm.TU.supercontig_77.106;prot=eq;transcript=eq + supercontig_77 No
CP00077G01070 cpa name=evm.TU.supercontig_77.107;pid=evm.TU.supercontig_77.107;prot=eq;transcript=eq + supercontig_77 No
FV3G17610 fve Ubiquitin carboxyl-terminal hydrolase 25 (AtUBP25) (probable) transcript=eq;prot=eq;pid=gene02362 + LG3 No
GM08G18720 gma 08 pid=16271633;transcript=eq;prot=eq;name=Glyma08g18720.1 - Gm08 No
GM15G40160 gma 15 pid=16300594;transcript=eq;prot=eq;name=Glyma15g40160.1 + Gm15 No
GM15G40170 gma 15 pid=16300595;transcript=eq;prot=eq;name=Glyma15g40170.1 + Gm15 No
LJ0G453850 lja prot=eq;transcript=eq;scaffold=LjT36L22;name=LjT36L22.160.nd + chr0 No
LJ0G453860 lja prot=eq;transcript=eq;scaffold=LjT36L22;name=LjT36L22.170.nd + chr0 No
MD00G300370 mdo transcript=eq;prot=eq;pid=MDP0000263298;tid=MDP0000263298;contig=MDC012778.165 + MDC012778.165 No
MD10G015860 mdo transcript=eq;prot=eq;pid=MDP0000159173;tid=MDP0000159173;contig=MDC000810.342 + 10 No
ME02993G00090 mes PACid=17985102;RNAname=cassava4.1_003653m;GeneName=cassava4.1_003653m.g;transcript=eq;prot=eq - scaffold02993 No
ME03542G00360 mes PACid=17973408;RNAname=cassava4.1_003483m;GeneName=cassava4.1_003483m.g;transcript=eq;prot=eq + scaffold03542 No
ME12355G00010 mes PACid=17976175;RNAname=cassava4.1_012828m;GeneName=cassava4.1_012828m.g;transcript=eq;prot=eq + scaffold12355 No
MRCC299_09G03970 mrcc299 name=e_gw2.09.335.1;pid=84843;prot=eq;tid=84843;transcript=eq - Chr_09 No
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