Sub-family  

Parent family
HOM000031
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO001225 has 40 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G26390 aly name=Al_scaffold_0001_2574;pid=880807;prot=eq;tid=912320 + scaffold_1 No
AL2G18200 aly name=scaffold_201854.1;pid=894780;prot=eq;tid=926293 - scaffold_2 No
AL8G29200 aly name=fgenesh1_pm.C_scaffold_8001845;pid=332502;prot=eq;tid=332502 + scaffold_8 No
AT1G27040 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 5753 Blast hits to 5637 proteins in 1030 species: Archae - 0; Bacteria - 2265; Metazoa - 487; Fungi - 395; Plants - 2179; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; - 1 No
AT1G69850 ath Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.;nitrate transporter 1:2 transcript=eq;prot=eq; - 1 No
AT5G62730 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 6918 Blast hits to 6790 proteins in 1275 species: Archae - 0; Bacteria - 3368; Metazoa - 483; Fungi - 402; Plants - 2165; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 5 No
BD1G37330 bdi symporter activity (Blast2GO) pid=Bradi1g37330.1;tid=Bradi1g37330.1;GeneName=Bradi1g37330;transcript=eq;prot=eq + Bd1 No
CP00017G01810 cpa name=evm.TU.supercontig_17.181;pid=evm.TU.supercontig_17.181;prot=eq;transcript=eq + supercontig_17 No
FV0G06210 fve Peptide transporter PTR2 (probable) transcript=eq;prot=eq;pid=gene04030 - scf0513158 No
FV5G13960 fve Peptide transporter PTR2 (probable) transcript=eq;prot=eq;pid=gene25943 - LG5 No
GM01G04900 gma 01 pid=16243440;transcript=eq;prot=eq;name=Glyma01g04900.1 + Gm01 No
GM02G02620 gma 02 pid=16246756;transcript=eq;prot=eq;name=Glyma02g02620.1 - Gm02 No
GM05G01380 gma 05 pid=16257949;transcript=eq;prot=eq;name=Glyma05g01380.1 - Gm05 No
GM08G40730 gma 08 pid=16273390;transcript=eq;prot=eq;name=Glyma08g40730.1 + Gm08 No
GM08G40740 gma 08 pid=16273391;transcript=eq;prot=eq;name=Glyma08g40740.1 + Gm08 No
GM17G10500 gma 17 pid=16305096;transcript=eq;prot=eq;name=Glyma17g10500.1 + Gm17 No
GM18G16370 gma 18 pid=16308967;transcript=eq;prot=eq;name=Glyma18g16370.1 - Gm18 No
LJ2G016300 lja prot=eq;transcript=eq;scaffold=CM0608;name=chr2.CM0608.520.nc + chr2 No
LJ4G018570 lja prot=eq;transcript=eq;scaffold=CM0170;name=chr4.CM0170.290.nc + chr4 No
MD00G282840 mdo transcript=eq;prot=eq;pid=MDP0000241277;tid=MDP0000241277;contig=MDC012086.325 - MDC012086.325 No
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