Sub-family  

Parent family
HOM001338
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (5 genes)



The gene family ORTHO001160 has 41 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12760 aly name=fgenesh2_kg.3__1291__AT3G12280.1;pid=478590;prot=eq;tid=478590 - scaffold_3 No
AT3G12280 ath Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. Also required for correct differentiation of male gametophytic cell types. Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA.;retinoblastoma-related 1 transcript=eq;prot=eq; - 3 No
BD3G41630 bdi retinoblastoma (RB) pid=Bradi3g41630.1;tid=Bradi3g41630.1;GeneName=Bradi3g41630;Name=BdRBR1;transcript=eq;prot=eq - Bd3 No
BD4G17210 bdi retinoblastoma (RB) pid=Bradi4g17210.1;tid=Bradi4g17210.1;GeneName=Bradi4g17210;Name=BdRBR2;transcript=eq;prot=eq + Bd4 No
CP00169G00340 cpa name=evm.TU.supercontig_169.34;pid=evm.TU.supercontig_169.34;prot=eq;transcript=eq - supercontig_169 No
CR06G01440 cre name=estExt_fgenesh2_pg.C_30419;pid=187248;prot=eq;tid=187248;transcript=eq + chromosome_6 No
FV7G15540 fve Retinoblastoma-related protein (putative) transcript=eq;prot=eq;pid=gene13926 + LG7 No
GM04G36700 gma 04 pid=16256967;transcript=eq;prot=eq;name=Glyma04g36700.1 + Gm04 No
GM13G26170 gma 13 pid=16291614;transcript=eq;prot=eq;name=Glyma13g26170.1 - Gm13 No
GM15G36890 gma 15 pid=16300256;transcript=eq;prot=eq;name=Glyma15g36890.1 + Gm15 No
LJ0G042060 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_017028;name=LjSGA_017028.1 - LjSGA_017028 No
MD00G192560 mdo transcript=eq;prot=eq;pid=MDP0000175204;tid=MDP0000175204;contig=MDC008263.201 + MDC008263.201 No
MD02G026310 mdo transcript=eq;prot=eq;pid=MDP0000315137;tid=MDP0000315137;contig=MDC022242.136 + 2 No
MD07G003140 mdo transcript=eq;prot=eq;pid=MDP0000172418;tid=MDP0000172418;contig=MDC004013.428 + 7 No
ME01027G00150 mes PACid=17985653;RNAname=cassava4.1_001500m;GeneName=cassava4.1_001500m.g;transcript=eq;prot=eq + scaffold01027 No
ME09974G00020 mes PACid=17966999;RNAname=cassava4.1_001570m;GeneName=cassava4.1_001570m.g;transcript=eq;prot=eq - scaffold09974 No
MRCC299_15G01990 mrcc299 name=EuGene.1500010197;pid=64476;prot=eq;tid=64476;transcript=eq + Chr_15 No
MT8G040560 mtr Retinoblastoma-related protein 1 (AHRD V1 ***- Q9M7J0_9ROSI); contains Interpro domain(s) IPR002720 Retinoblastoma-associated protein, A-box transcript=eq;prot=eq;pid=Medtr8g040560.1; - 8 No
OL15G01830 olu NULL name=eugene.1500010184,pid=27862,prot=eq,tid=27862 + Chr_15 No
OS08G42600 osa retinoblastoma%2Drelated protein%2Dlike, putative, expressed transcript=eq;prot=eq; - 8 No
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