Sub-family  

Parent family
HOM000165
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO001146 has 41 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G39250 aly name=fgenesh2_kg.1__3753__AT1G44110.1;pid=473799;prot=eq;tid=473799 - scaffold_1 No
AT1G44110 ath Cyclin A1;1 (CYCA1;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCLIN A1;2 (TAIR:AT1G77390.1); Has 4548 Blast hits to 4417 proteins in 376 species: Archae - 0; Bacteria - 4; Metazoa - 1999; Fungi - 561; Plants - 1168; Viruses - 34; Other Eukaryotes - 782 (source: NCBI BLink).;Cyclin A1;1 transcript=eq;prot=eq; - 1 No
BD2G07946 bdi pid=Bradi2g07946.1;tid=Bradi2g07946.1;GeneName=Bradi2g07946;transcript=eq;prot=eq - Bd2 No
BD2G07952 bdi pid=Bradi2g07952.1;tid=Bradi2g07952.1;GeneName=Bradi2g07952;transcript=eq;prot=eq - Bd2 No
CP00064G01290 cpa name=evm.TU.supercontig_64.129;pid=evm.TU.supercontig_64.129;prot=eq;transcript=eq + supercontig_64 No
CR03G12330 cre name=Chlre2_kg.scaffold_19000127;pid=147453;prot=eq;tid=147453;transcript=eq - chromosome_3 No
FV2G30030 fve Cyclin-A1-1 (CycA1) (similar to) transcript=eq;prot=eq;pid=gene11239 + LG2 No
GM04G07550 gma 04 pid=16255203;transcript=eq;prot=eq;name=Glyma04g07550.1 + Gm04 No
GM04G42540 gma 04 pid=16257646;transcript=eq;prot=eq;name=Glyma04g42540.1 - Gm04 No
GM06G07670 gma 06 pid=16262088;transcript=eq;prot=eq;name=Glyma06g07670.1 + Gm06 No
GM06G12220 gma 06 pid=16262644;transcript=eq;prot=eq;name=Glyma06g12220.1 + Gm06 No
LJ1G010470 lja prot=eq;transcript=eq;scaffold=CM0181;name=chr1.CM0181.20.nc + chr1 No
MD00G193590 mdo transcript=eq;prot=eq;pid=MDP0000277905;tid=MDP0000277905;contig=MDC008319.388 + MDC008319.388 No
MD00G371660 mdo transcript=eq;prot=eq;pid=MDP0000234707;tid=MDP0000234707;contig=MDC016821.185 - MDC016821.185 No
ME03186G00060 mes PACid=17980260;RNAname=cassava4.1_007567m;GeneName=cassava4.1_007567m.g;transcript=eq;prot=eq + scaffold03186 No
ME07238G00520 mes PACid=17991436;RNAname=cassava4.1_026079m;GeneName=cassava4.1_026079m.g;transcript=eq;prot=eq + scaffold07238 No
MRCC299_01G05930 mrcc299 name=PierreAnnot_CycA;pid=107361;prot=eq;tid=107361;transcript=eq - Chr_01 No
MT8G095930 mtr Cyclin A-like protein (AHRD V1 ***- Q40490_TOBAC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A transcript=eq;prot=eq;pid=Medtr8g095930.1; + 8 No
OS01G13260 osa cyclin%2DA1, putative, expressed transcript=eq;prot=eq; - 1 No
OS12G20324 osa cyclin%2DA1, putative, expressed transcript=eq;prot=eq; - 12 No
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