Sub-family  

Parent family
HOM000308
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
zma
Zea mays (3 genes)



The gene family ORTHO001128 has 41 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G00270 aly name=fgenesh2_kg.9__16__AT4G13340.1;pid=497051;prot=eq;tid=497051 - scaffold_9 No
AL3G27830 aly name=Al_scaffold_0003_2692;pid=874051;prot=eq;tid=905564 - scaffold_3 No
AL7G24000 aly name=fgenesh2_kg.7__2425__AT4G18670.1;pid=492992;prot=eq;tid=492992 + scaffold_7 No
AT3G24480 ath Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G13340.1); Has 128997 Blast hits to 49133 proteins in 1941 species: Archae - 161; Bacteria - 13645; Metazoa - 31793; Fungi - 8450; Plants - 59695; Viruses - 2612; Other Eukaryotes - 12641 (source: NCBI BLink).;Leucine-rich repeat (LRR) family protein transcript=eq;prot=eq; - 3 No
AT4G13340 ath Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 637879 Blast hits to 129296 proteins in 3596 species: Archae - 1468; Bacteria - 134638; Metazoa - 215120; Fungi - 74599; Plants - 120849; Viruses - 14592; Other Eukaryotes - 76613 (source: NCBI BLink).;Leucine-rich repeat (LRR) family protein transcript=eq;prot=eq; + 4 No
AT4G18670 ath Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 60217 Blast hits to 20533 proteins in 968 species: Archae - 15; Bacteria - 2115; Metazoa - 6070; Fungi - 1014; Plants - 47629; Viruses - 97; Other Eukaryotes - 3277 (source: NCBI BLink).;Leucine-rich repeat (LRR) family protein transcript=eq;prot=eq; - 4 No
BD2G33930 bdi pid=Bradi2g33930.1;tid=Bradi2g33930.1;GeneName=Bradi2g33930;transcript=eq;prot=eq + Bd2 No
BD2G42477 bdi pid=Bradi2g42477.1;tid=Bradi2g42477.1;GeneName=Bradi2g42477;transcript=eq;prot=eq + Bd2 No
CP00023G01050 cpa name=evm.TU.supercontig_23.105;pid=evm.TU.supercontig_23.105;prot=eq;transcript=eq + supercontig_23 No
FV1G00770 fve hypothetical protein transcript=eq;prot=eq;pid=gene02087 - LG1 No
GM05G35330 gma 05 pid=16260778;transcript=eq;prot=eq;name=Glyma05g35330.1 - Gm05 No
GM07G09730 gma 07 pid=16266782;transcript=eq;prot=eq;name=Glyma07g09730.1 + Gm07 No
GM08G04390 gma 08 pid=16269929;transcript=eq;prot=eq;name=Glyma08g04390.1 + Gm08 No
GM09G32080 gma 09 pid=16276897;transcript=eq;prot=eq;name=Glyma09g32080.1 - Gm09 No
LJ4G034920 lja prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.240.nc + chr4 No
MD00G109510 mdo transcript=eq;prot=eq;pid=MDP0000148414;tid=MDP0000148414;contig=MDC004665.236 - MDC004665.236 No
ME04360G00190 mes PACid=17970313;RNAname=cassava4.1_026156m;GeneName=cassava4.1_026156m.g;transcript=ne;prot=eq + scaffold04360 No
ME06881G00010 mes PACid=17984742;RNAname=cassava4.1_032410m;GeneName=cassava4.1_032410m.g;transcript=ne;prot=eq + scaffold06881 No
MT6G086120 mtr Extensin-like protein (AHRD V1 *--- Q9LHF1_ARATH) transcript=eq;prot=eq;pid=Medtr6g086120.1; - 6 No
MT8G083560 mtr Receptor-like protein kinase 5 (AHRD V1 *--- P47735); contains Interpro domain(s) IPR013210 Leucine-rich repeat, N-terminal transcript=eq;prot=eq;pid=Medtr8g083560.1; + 8 No
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