Sub-family  

Parent family
HOM000192
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (1 gene)



The gene family ORTHO001094 has 42 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G13770 aly name=scaffold_401388.1;pid=901887;prot=eq;tid=933400 + scaffold_4 No
AL6G05650 aly name=fgenesh2_kg.6__541__AT5G06060.1;pid=487407;prot=eq;tid=487407 - scaffold_6 No
AT2G29260 ath NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G06060.1); Has 125944 Blast hits to 125708 proteins in 3633 species: Archae - 994; Bacteria - 82126; Metazoa - 5739; Fungi - 6481; Plants - 2838; Viruses - 5; Other Eukaryotes - 27761 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; + 2 No
AT5G06060 ath NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; - 5 No
BD1G66900 bdi carbonyl reductase (NADPH) activity, retinal dehydrogenase activity (Blast2GO) pid=Bradi1g66900.1;tid=Bradi1g66900.1;GeneName=Bradi1g66900;transcript=eq;prot=eq + Bd1 No
BD1G66910 bdi estradiol 17-beta-dehydrogenase activity, testosterone 17-beta-dehydrogenase (NADP+) activity (Blast2GO) pid=Bradi1g66910.1;tid=Bradi1g66910.1;GeneName=Bradi1g66910;transcript=eq;prot=eq + Bd1 No
CP00019G02710 cpa name=evm.TU.supercontig_19.272;pid=evm.TU.supercontig_19.272;prot=eq;transcript=eq - supercontig_19 No
CP00081G00950 cpa name=evm.TU.supercontig_81.95;pid=evm.TU.supercontig_81.95;prot=eq;transcript=eq - supercontig_81 No
CR16G07170 cre name=estExt_fgenesh1_pm.C_chromosome_160296;pid=381419;prot=eq;tid=381426;transcript=eq + chromosome_16 No
FV7G25720 fve Tropinone reductase homolog (putative) transcript=eq;prot=eq;pid=gene26317 - LG7 No
GM11G14390 gma 11 pid=16283868;transcript=eq;prot=eq;name=Glyma11g14390.1 - Gm11 No
GM11G34270 gma 11 pid=16285336;transcript=eq;prot=eq;name=Glyma11g34270.1 - Gm11 No
GM11G34380 gma 11 pid=16285350;transcript=eq;prot=eq;name=Glyma11g34380.1 + Gm11 No
GM11G34400 gma 11 pid=16285353;transcript=eq;prot=eq;name=Glyma11g34400.1 + Gm11 No
GM12G06330 gma 12 pid=16286608;transcript=eq;prot=eq;name=Glyma12g06330.1 - Gm12 No
GM18G03950 gma 18 pid=16307851;transcript=eq;prot=eq;name=Glyma18g03950.1 - Gm18 No
LJ3G031560 lja partial;prot=eq;transcript=eq;scaffold=CM0792;name=chr3.CM0792.70.nd - chr3 No
MD03G006210 mdo transcript=eq;prot=eq;pid=MDP0000291707;tid=MDP0000291707;contig=MDC011236.661 - 3 No
ME07991G00970 mes PACid=17967748;RNAname=cassava4.1_011507m;GeneName=cassava4.1_011507m.g;transcript=eq;prot=eq + scaffold07991 No
ME08265G02340 mes PACid=17988683;RNAname=cassava4.1_013809m;GeneName=cassava4.1_013809m.g;transcript=eq;prot=eq + scaffold08265 No
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