Sub-family  

Parent family
HOM001012
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family ORTHO001080 has 42 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G26100 aly name=fgenesh2_kg.2__2006__AT1G77130.1;pid=476876;prot=eq;tid=476876 - scaffold_2 No
AL3G20210 aly name=fgenesh2_kg.3__2073__AT3G18660.2;pid=479372;prot=eq;tid=479372 - scaffold_3 No
AT1G77130 ath plant glycogenin-like starch initiation protein 2 (PGSIP2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.3); Has 1471 Blast hits to 1463 proteins in 343 species: Archae - 0; Bacteria - 240; Metazoa - 259; Fungi - 287; Plants - 508; Viruses - 75; Other Eukaryotes - 102 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 2 transcript=eq;prot=eq; - 1 No
AT3G18660 ath Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.;plant glycogenin-like starch initiation protein 1 transcript=eq;prot=eq; - 3 No
BD2G24737 bdi pid=Bradi2g24737.1;tid=Bradi2g24737.1;GeneName=Bradi2g24737;transcript=eq;prot=eq + Bd2 No
BD2G56810 bdi Putative glycogenin-like starch initiation protein, CAZy family GT8 pid=Bradi2g56810.1;tid=Bradi2g56810.1;GeneName=Bradi2g56810;Name=BdPGSIP2;transcript=eq;prot=eq + Bd2 No
CP00042G01170 cpa name=evm.TU.supercontig_42.117;pid=evm.TU.supercontig_42.117;prot=eq;transcript=eq + supercontig_42 No
CP00049G00610 cpa name=evm.TU.supercontig_49.61;pid=evm.TU.supercontig_49.61;prot=eq;transcript=eq + supercontig_49 No
FV1G20870 fve Glycogenin-2 (GN-2) (probable) transcript=eq;prot=eq;pid=gene17874 + LG1 No
FV2G22990 fve Glycogenin-2 (GN-2) (probable) transcript=eq;prot=eq;pid=gene32694 + LG2 No
GM00G00625 gma 214 pid=16246449;transcript=eq;prot=eq;name=Glyma0214s00200.1 - scaffold_214 No
GM02G40480 gma 02 pid=16249688;transcript=eq;prot=eq;name=Glyma02g40480.1 - Gm02 No
GM04G39240 gma 04 pid=16257248;transcript=eq;prot=eq;name=Glyma04g39240.1 - Gm04 No
GM05G04770 gma 05 pid=16258340;transcript=eq;prot=eq;name=Glyma05g04770.1 + Gm05 No
GM05G32370 gma 05 pid=16260415;transcript=eq;prot=eq;name=Glyma05g32370.1 + Gm05 No
GM06G15690 gma 06 pid=16263091;transcript=eq;prot=eq;name=Glyma06g15690.1 + Gm06 No
GM14G28370 gma 14 pid=16296156;transcript=eq;prot=eq;name=Glyma14g28370.1 - Gm14 No
LJ0G053840 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_019958;name=LjSGA_019958.1 + LjSGA_019958 No
MD00G132400 mdo transcript=eq;prot=eq;pid=MDP0000277292;tid=MDP0000277292;contig=MDC005658.277 + MDC005658.277 No
MD06G008110 mdo transcript=eq;prot=eq;pid=MDP0000194880;tid=MDP0000194880;contig=MDC013187.318 - 6 No
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