Sub-family  

Parent family
HOM000775
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (1 gene)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family ORTHO001077 has 42 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G10100 aly name=fgenesh2_kg.2__693__ATCG00490.1;pid=475563;prot=eq;tid=475563 - scaffold_2 No
AL2G10440 aly name=Al_scaffold_0002_979;pid=876385;prot=eq;tid=907898 - scaffold_2 No
AL2G10770 aly name=fgenesh2_kg.2__732__ATCG00490.1;pid=475602;prot=eq;tid=475602 + scaffold_2 No
ATCG00490 ath large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.;ribulose-bisphosphate carboxylases transcript=eq;prot=eq; + chloroplast No
BD2G13082 bdi pid=Bradi2g13082.1;tid=Bradi2g13082.1;GeneName=Bradi2g13082;transcript=eq;prot=eq - Bd2 No
BD2G20990 bdi ribulose-bisphosphate carboxylase activity (Blast2GO) pid=Bradi2g20990.1;tid=Bradi2g20990.1;GeneName=Bradi2g20990;transcript=eq;prot=eq + Bd2 No
BD3G27278 bdi pid=Bradi3g27278.1;tid=Bradi3g27278.1;GeneName=Bradi3g27278;transcript=eq;prot=eq - Bd3 No
BD3G27325 bdi pid=Bradi3g27325.1;tid=Bradi3g27325.1;GeneName=Bradi3g27325;transcript=eq;prot=eq + Bd3 No
BDCG00480 bdi rbcL;ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit;protein_id=ACF08648.1; transl_table=11; + chloroplast No
CPCG00500 cpa rbcL;ribulose 1,5-bisphosphate carboxylase/oxygenase large chain;protein_id=ABY86790.1; see PubMed ID 8083883 for discussion on the translation start of rbcL;transl_table=11; + chloroplast No
CRCG00730 cre rbcL;ribulose bisphosphate carboxylase small subunit;protein_id=DAA00950.1; transl_table=11; - chloroplast No
FV0G54200 fve Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (similar to) transcript=eq;prot=eq;pid=gene00070 - scf0512628 No
FV0G58950 fve Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (similar to) transcript=eq;prot=eq;pid=gene32965 - scf0510832 No
GMCG00060 gma rbcL;ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit;protein_id=ABC25107.1; transl_table=11; - chloroplast No
LJ0G329020 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_116237;name=LjSGA_116237.1 - LjSGA_116237 No
LJ0G348460 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_124257;name=LjSGA_124257.1 + LjSGA_124257 No
LJCG00050 lja rbcL;large subunit of riblose-1,5-bisphosphatecarboxylase/oxygenase;protein_id=BAB33178.1; transl_table=11; - chloroplast No
MD00G325000 mdo transcript=eq;prot=eq;pid=MDP0000597996;tid=MDP0000597996;contig=MDC013754.149 - MDC013754.149 No
MECG00540 mes rbcL;ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit;protein_id=ABV66162.1; transl_table=11; + chloroplast No
MRCC299_CG00270 mrcc299 ribulose-bisphosphate carboxylase large chain;protein_id=ACO55540.1; transl_table=11; + chloroplast No
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