Sub-family  

Parent family
HOM002488
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO001029 has 43 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 43 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G35610 aly name=Al_scaffold_0004_3445;pid=871282;prot=eq;tid=902795 + scaffold_4 No
AL8G13090 aly name=fgenesh2_kg.8__815__AT5G49430.1;pid=494999;prot=eq;tid=494999 - scaffold_8 No
AT2G47410 ath WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink).;WD40/YVTN repeat-like-containing domain;Bromodomain transcript=eq;prot=eq; + 2 No
AT5G49430 ath WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT2G47410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;WD40/YVTN repeat-like-containing domain;Bromodomain transcript=eq;prot=eq; - 5 No
BD5G22017 bdi pid=Bradi5g22017.1;tid=Bradi5g22017.1;GeneName=Bradi5g22017;transcript=eq;prot=eq + Bd5 No
CP00009G00800 cpa name=evm.TU.supercontig_9.80;pid=evm.TU.supercontig_9.80;prot=eq;transcript=eq + supercontig_9 No
CR02G01080 cre name=kg.chromosome_2_#_220_#_XP_001701657.1;pid=300781;prot=eq;tid=300788;transcript=eq + chromosome_2 No
FV3G39620 fve PH-interacting protein (PHIP) (probable) transcript=eq;prot=eq;pid=gene05147 + LG3 No
FV5G34880 fve PH-interacting protein (PHIP) (probable) transcript=eq;prot=eq;pid=gene02301 + LG5 No
GM02G01620 gma 02 pid=16246632;transcript=eq;prot=eq;name=Glyma02g01620.1 + Gm02 No
GM09G04210 gma 09 pid=16274732;transcript=eq;prot=eq;name=Glyma09g04210.1 + Gm09 No
GM10G01670 gma 10 pid=16278243;transcript=eq;prot=eq;name=Glyma10g01670.1 + Gm10 No
GM15G15220 gma 15 pid=16298853;transcript=eq;prot=eq;name=Glyma15g15220.1 + Gm15 No
LJ0G053990 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_020000;name=LjSGA_020000.1 - LjSGA_020000 No
LJ0G210740 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_067865;name=LjSGA_067865.1 - LjSGA_067865 No
MD00G216000 mdo transcript=eq;prot=eq;pid=MDP0000319611;tid=MDP0000319611;contig=MDC009314.761 - MDC009314.761 No
MD03G025020 mdo transcript=eq;prot=eq;pid=MDP0000260907;tid=MDP0000260907;contig=MDC018940.237 + 3 No
MD11G028780 mdo transcript=eq;prot=eq;pid=MDP0000316636;tid=MDP0000316636;contig=MDC044046.6 + 11 No
MD13G014190 mdo transcript=eq;prot=eq;pid=MDP0000644679;tid=MDP0000644679;contig=MDC010610.303 + 13 No
MD16G009880 mdo transcript=eq;prot=eq;pid=MDP0000231796;tid=MDP0000231796;contig=MDC008433.658 + 16 No
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