Sub-family  

Parent family
HOM000125
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO000942 has 44 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 44 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G09030 aly name=fgenesh2_kg.3__898__AT3G08940.2;pid=478197;prot=eq;tid=478197 + scaffold_3 No
AL4G26780 aly name=fgenesh2_kg.4__2110__AT2G40100.1;pid=483050;prot=eq;tid=483050 + scaffold_4 No
AL6G00530 aly name=fgenesh2_kg.6__56__AT5G01530.1;pid=486922;prot=eq;tid=486922 - scaffold_6 No
AT2G40100 ath Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II;light harvesting complex photosystem II transcript=eq;prot=eq; + 2 No
AT3G08940 ath Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II;light harvesting complex photosystem II transcript=eq;prot=eq; + 3 No
AT5G01530 ath light harvesting complex photosystem II (LHCB4.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;light harvesting complex photosystem II transcript=eq;prot=eq; + 5 No
BD1G24870 bdi pid=Bradi1g24870.1;tid=Bradi1g24870.1;GeneName=Bradi1g24870;transcript=eq;prot=eq + Bd1 No
CP00019G01820 cpa name=evm.TU.supercontig_19.183;pid=evm.TU.supercontig_19.183;prot=eq;transcript=eq + supercontig_19 No
CP00163G00200 cpa name=evm.TU.supercontig_163.20;pid=evm.TU.supercontig_163.20;prot=eq;transcript=eq - supercontig_163 No
CR17G05090 cre name=estExt_fgenesh2_kg.C_320006;pid=184810;prot=eq;tid=184810;transcript=eq - chromosome_17 No
FV6G10570 fve Chlorophyll a-b binding protein CP29.1, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene18861 + LG6 No
FV7G29360 fve Chlorophyll a-b binding protein CP29.3, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene20960 - LG7 No
GM01G28810 gma 01 pid=16244664;transcript=eq;prot=eq;name=Glyma01g28810.1 - Gm01 No
GM03G08280 gma 03 pid=16251467;transcript=eq;prot=eq;name=Glyma03g08280.1 + Gm03 No
GM11G35130 gma 11 pid=16285442;transcript=eq;prot=eq;name=Glyma11g35130.1 - Gm11 No
GM18G03220 gma 18 pid=16307777;transcript=eq;prot=eq;name=Glyma18g03220.1 + Gm18 No
LJ0G049110 lja prot=eq;transcript=eq;scaffold=LjSGA_018808;name=LjSGA_018808.1 + LjSGA_018808 No
LJ0G459760 lja prot=eq;transcript=eq;scaffold=LjT24M21;name=LjT24M21.140.nd - chr0 No
MD01G014610 mdo transcript=eq;prot=eq;pid=MDP0000132360;tid=MDP0000132360;contig=MDC021679.160 - 1 No
MD04G012240 mdo transcript=eq;prot=eq;pid=MDP0000757636;tid=MDP0000757636;contig=MDC009757.32 - 4 No
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