Sub-family  

Parent family
HOM000395
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000838 has 46 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 46 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G36710 aly name=fgenesh2_kg.3__3225__AT2G19480.2;pid=480524;prot=eq;tid=480524 - scaffold_3 No
AL7G15950 aly name=fgenesh2_kg.7__1636__AT4G26110.1;pid=492203;prot=eq;tid=492203 - scaffold_7 No
AL8G22570 aly name=fgenesh1_pg.C_scaffold_8001699;pid=357912;prot=eq;tid=357912 + scaffold_8 No
AT2G19480 ath This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.;nucleosome assembly protein 1;2 transcript=eq;prot=eq; + 2 No
AT4G26110 ath Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.;nucleosome assembly protein1;1 transcript=eq;prot=eq; + 4 No
AT5G56950 ath Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.;nucleosome assembly protein 1;3 transcript=eq;prot=eq; + 5 No
BD1G50860 bdi pid=Bradi1g50860.1;tid=Bradi1g50860.1;GeneName=Bradi1g50860;transcript=eq;prot=eq - Bd1 No
BD2G18330 bdi pid=Bradi2g18330.1;tid=Bradi2g18330.1;GeneName=Bradi2g18330;transcript=eq;prot=eq + Bd2 No
CP40789G00010 cpa name=evm.TU.contig_40789.1;pid=evm.TU.contig_40789.1;prot=eq;transcript=eq + contig_40789 No
CR09G06310 cre name=estExt_fgenesh2_pg.C_300166;pid=192162;prot=eq;tid=192162;transcript=eq + chromosome_9 No
FV1G09210 fve Nucleosome assembly protein 1-like 1 (probable) transcript=eq;prot=eq;pid=gene12661 - LG1 No
GM09G07410 gma 09 pid=16275084;transcript=eq;prot=eq;name=Glyma09g07410.1 - Gm09 No
GM13G16500 gma 13 pid=16290489;transcript=eq;prot=eq;name=Glyma13g16500.1 - Gm13 No
GM13G42520 gma 13 pid=16293534;transcript=eq;prot=eq;name=Glyma13g42520.1 + Gm13 No
GM15G02860 gma 15 pid=16297418;transcript=eq;prot=eq;name=Glyma15g02860.1 - Gm15 No
GM15G18600 gma 15 pid=16299225;transcript=eq;prot=eq;name=Glyma15g18600.1 - Gm15 No
GM17G06170 gma 17 pid=16304588;transcript=eq;prot=eq;name=Glyma17g06170.1 + Gm17 No
LJ4G024310 lja prot=eq;transcript=eq;scaffold=CM0297;name=chr4.CM0297.70.nd - chr4 No
MD00G026910 mdo transcript=eq;prot=eq;pid=MDP0000135609;tid=MDP0000135609;contig=MDC001120.261 - MDC001120.261 No
MD13G025350 mdo transcript=eq;prot=eq;pid=MDP0000628052;tid=MDP0000628052;contig=MDC000502.364 - 13 No
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