Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO000792 has 47 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 47 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G01750 aly name=Al_scaffold_0004_171;pid=868008;prot=eq;tid=899521 + scaffold_4 No
AL4G32380 aly name=scaffold_403388.1;pid=903887;prot=eq;tid=935400 - scaffold_4 No
AL6G09960 aly name=fgenesh2_kg.6__986__AT5G10260.1;pid=487852;prot=eq;tid=487852 + scaffold_6 No
AT2G22290 ath RAB GTPase homolog H1D (RABH1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17; Bacteria - 142; Metazoa - 14130; Fungi - 3768; Plants - 3162; Viruses - 20; Other Eukaryotes - 5721 (source: NCBI BLink).;RAB GTPase homolog H1D transcript=eq;prot=eq; + 2 No
AT2G44610 ath Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.;Ras-related small GTP-binding family protein transcript=eq;prot=eq; - 2 No
AT5G10260 ath RAB GTPase homolog H1E (RABH1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1D (TAIR:AT2G22290.1); Has 27017 Blast hits to 26988 proteins in 737 species: Archae - 21; Bacteria - 160; Metazoa - 14299; Fungi - 3762; Plants - 2966; Viruses - 20; Other Eukaryotes - 5789 (source: NCBI BLink).;RAB GTPase homolog H1E transcript=eq;prot=eq; + 5 No
BD1G27010 bdi GTPase activity (Blast2GO) pid=Bradi1g27010.1;tid=Bradi1g27010.1;GeneName=Bradi1g27010;transcript=eq;prot=eq + Bd1 No
CP00052G00610 cpa name=evm.TU.supercontig_52.62;pid=evm.TU.supercontig_52.62;prot=eq;transcript=eq - supercontig_52 No
CP00230G00020 cpa name=evm.TU.supercontig_230.2;pid=evm.TU.supercontig_230.2;prot=eq;transcript=eq - supercontig_230 No
CR01G09890 cre name=SAN_e_gwW.1.373.1;pid=195522;prot=eq;tid=195522;transcript=eq - chromosome_1 No
FV0G22860 fve Ras-related protein RABH1B (putative) transcript=eq;prot=eq;pid=gene16310 - scf0513168 No
FV7G21160 fve Ras-related protein RABH1B (similar to) transcript=eq;prot=eq;pid=gene03077 + LG7 No
GM01G41100 gma 01 pid=16245898;transcript=eq;prot=eq;name=Glyma01g41100.1 - Gm01 No
GM05G05860 gma 05 pid=16258464;transcript=eq;prot=eq;name=Glyma05g05860.1 + Gm05 No
GM05G31200 gma 05 pid=16260263;transcript=eq;prot=eq;name=Glyma05g31200.1 - Gm05 No
GM08G14390 gma 08 pid=16271120;transcript=eq;prot=eq;name=Glyma08g14390.1 - Gm08 No
GM17G16200 gma 17 pid=16305765;transcript=eq;prot=eq;name=Glyma17g16200.1 + Gm17 No
GM18G02040 gma 18 pid=16307643;transcript=eq;prot=eq;name=Glyma18g02040.1 - Gm18 No
LJ4G014220 lja partial;prot=eq;transcript=eq;scaffold=CM0831;name=chr4.CM0831.280.nd + chr4 No
MD00G330260 mdo transcript=eq;prot=eq;pid=MDP0000200785;tid=MDP0000200785;contig=MDC013958.326 - MDC013958.326 No
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