Sub-family  

Parent family
HOM001123
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO000786 has 47 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 47 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G04520 aly name=scaffold_300496.1;pid=896526;prot=eq;tid=928039 + scaffold_3 No
AL5G00240 aly name=fgenesh2_kg.5__34__AT2G01290.1;pid=484042;prot=eq;tid=484042 - scaffold_5 No
AT2G01290 ath Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.;ribose-5-phosphate isomerase 2 transcript=eq;prot=eq; - 2 No
AT3G04790 ath Ribose 5-phosphate isomerase, type A protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235; Bacteria - 3572; Metazoa - 110; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).;Ribose 5-phosphate isomerase, type A protein transcript=eq;prot=eq; + 3 No
BD1G55740 bdi ribose-5-phosphate isomerase activity (Blast2GO) pid=Bradi1g55740.1;tid=Bradi1g55740.1;GeneName=Bradi1g55740;transcript=eq;prot=eq - Bd1 No
CP00065G01130 cpa name=evm.TU.supercontig_65.113;pid=evm.TU.supercontig_65.113;prot=eq;transcript=eq - supercontig_65 No
CP00117G00800 cpa name=evm.TU.supercontig_117.80;pid=evm.TU.supercontig_117.80;prot=eq;transcript=eq - supercontig_117 No
CR03G08130 cre name=estExt_GenewiseH_1.C_140147;pid=55838;prot=eq;tid=55838;transcript=eq - chromosome_3 No
FV0G06330 fve Probable ribose-5-phosphate isomerase (similar to) transcript=eq;prot=eq;pid=gene04042 - scf0513158 No
FV0G25290 fve Probable ribose-5-phosphate isomerase (similar to) transcript=eq;prot=eq;pid=gene16545 - scf0513168 No
GM03G40640 gma 03 pid=16254039;transcript=eq;prot=eq;name=Glyma03g40640.1 - Gm03 No
GM10G41160 gma 10 pid=16281716;transcript=eq;prot=eq;name=Glyma10g41160.1 + Gm10 No
GM19G43310 gma 19 pid=16314781;transcript=eq;prot=eq;name=Glyma19g43310.1 - Gm19 No
GM20G26110 gma 20 pid=16316875;transcript=eq;prot=eq;name=Glyma20g26110.1 - Gm20 No
LJ5G029390 lja prot=eq;transcript=eq;scaffold=LjT24B10;name=chr5.LjT24B10.100.nc - chr5 No
MD00G321300 mdo transcript=eq;prot=eq;pid=MDP0000293164;tid=MDP0000293164;contig=MDC013621.241 + MDC013621.241 No
MD12G023760 mdo transcript=eq;prot=eq;pid=MDP0000412263;tid=MDP0000412263;contig=MDC002115.411 - 12 No
MD13G001920 mdo transcript=eq;prot=eq;pid=MDP0000271244;tid=MDP0000271244;contig=MDC004434.336 + 13 No
MD16G000490 mdo transcript=eq;prot=eq;pid=MDP0000867150;tid=MDP0000867150;contig=MDC013143.84 + 16 No
ME03264G00130 mes PACid=17991160;RNAname=cassava4.1_014596m;GeneName=cassava4.1_014596m.g;transcript=eq;prot=eq + scaffold03264 No
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