Sub-family  

Parent family
HOM001116
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family ORTHO000776 has 47 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 47 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28850 aly name=fgenesh2_kg.1__2923__AT1G27650.1;pid=472969;prot=eq;tid=472969 + scaffold_1 No
AL5G12720 aly name=fgenesh1_pm.C_scaffold_5000707;pid=323163;prot=eq;tid=323163 - scaffold_5 No
AL8G08010 aly name=fgenesh2_kg.8__553__AT5G42820.1;pid=494737;prot=eq;tid=494737 + scaffold_8 No
AT1G27650 ath U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.;U2 snRNP auxiliary factor small subunit, putative transcript=eq;prot=eq; + 1 No
AT5G42820 ath U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.;Zinc finger C-x8-C-x5-C-x3-H type family protein transcript=eq;prot=eq; - 5 No
BD2G16520 bdi RRM domain containing protein similar to U2 auxiliary factor small subunit, U2AF35B, [Arabidopsis thaliana] AT5G42820 pid=Bradi2g16520.1;tid=Bradi2g16520.1;GeneName=Bradi2g16520;transcript=eq;prot=eq - Bd2 No
BD2G46080 bdi RRM domain containing protein similar to U2 snRNP auxiliary factor-related protein, [Arabidopsis thaliana] AT1G27650 pid=Bradi2g46080.1;tid=Bradi2g46080.1;GeneName=Bradi2g46080;transcript=eq;prot=eq - Bd2 No
BD4G33870 bdi RRM domain containing protein similar to U2 auxiliary factor small subunit, [Arabidopsis thaliana] AT1G27650 pid=Bradi4g33870.1;tid=Bradi4g33870.1;GeneName=Bradi4g33870;transcript=eq;prot=eq + Bd4 No
CP00047G00470 cpa name=evm.TU.supercontig_47.47;pid=evm.TU.supercontig_47.47;prot=eq;transcript=eq - supercontig_47 No
CP24967G00070 cpa name=evm.TU.contig_24967.7;pid=evm.TU.contig_24967.7;prot=eq;transcript=eq - contig_24967 No
CR06G00470 cre name=Chlre2_kg.scaffold_3000449;pid=142476;prot=eq;tid=142476;transcript=eq - chromosome_6 No
FV5G28110 fve Splicing factor U2af small subunit B (U2 snRNP auxiliary factor small subunit B) (similar to) transcript=eq;prot=eq;pid=gene29156 + LG5 No
GM07G20090 gma 07 pid=16267815;transcript=eq;prot=eq;name=Glyma07g20090.1 + Gm07 No
GM12G30590 gma 12 pid=16288417;transcript=eq;prot=eq;name=Glyma12g30590.1 + Gm12 No
GM20G00950 gma 20 pid=16315103;transcript=eq;prot=eq;name=Glyma20g00950.1 + Gm20 No
LJ0G413200 lja prot=eq;transcript=eq;scaffold=LjB15A13;name=LjB15A13.120.nd + chr0 No
LJ3G029860 lja prot=eq;transcript=eq;scaffold=CM0396;name=chr3.CM0396.90.nc - chr3 No
MD00G138830 mdo transcript=eq;prot=eq;pid=MDP0000284705;tid=MDP0000284705;contig=MDC005909.464 - MDC005909.464 No
MD06G000310 mdo transcript=eq;prot=eq;pid=MDP0000321343;tid=MDP0000321343;contig=MDC016649.157 + 6 No
MD11G011650 mdo transcript=eq;prot=eq;pid=MDP0000640144;tid=MDP0000640144;contig=MDC000442.224 - 11 No
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